mapEntrezIdToSegments: mapEntrezIdToSegments

In gdario/cnvtools: What the package does (short line)

Description

Map a set of ENTREZ IDs to the segments contained in a 'segment file'.

Usage

  mapEntrezIdToSegments(entrezid,
    segmentFile = "../common_cnv_and_ge_annotation/RData/cnv_segments_304_patients.RData")

Arguments

entrezid	character vector containing the ENTREZ IDs
segmentFile	string containing the full path to a file containing the output of a segmentation algorithm, like DNAcopy (the output slot).

Details

Given a set of ENTREZ IDs, find the segments in a segmented data set overlapping with the corresponding genes.

Value

a data frame containing the ENTREZ IDs and the segments that overlap with the genomic coordinates of the genes.

Author(s)

Giovanni d'Ario

gdario/cnvtools documentation built on May 16, 2019, 11:13 p.m.