Files in gdkrmr/dimRed

A Framework for Dimensionality Reduction

NEWS.md R/autoencoder.R R/dataSets.R R/diffmap.R R/dimRed.R R/dimRedData-class.R R/dimRedMethod-class.R R/dimRedResult-class.R R/drr.R R/embed.R R/fastica.R R/get_info.R R/graph_embed.R R/hlle.R R/isomap.R R/kpca.R R/l1pca.R R/leim.R R/lle.R R/loe.R R/mds.R R/misc.R R/mixColorSpaces.R R/nmds.R R/nnmf.R R/pca.R R/plot.R R/quality.R R/rotate.R R/soe.R R/tsne.R R/umap.R README.md man-roxygen/dimRedMethodGeneralUsage.R man-roxygen/dimRedMethodSlots.R man/AUC_lnK_R_NX-dimRedResult-method.Rd man/AutoEncoder-class.Rd man/DRR-class.Rd man/DiffusionMaps-class.Rd man/DrL-class.Rd man/FastICA-class.Rd man/FruchtermanReingold-class.Rd man/HLLE-class.Rd man/Isomap-class.Rd man/KamadaKawai-class.Rd man/LCMC-dimRedResult-method.Rd man/LaplacianEigenmaps-class.Rd man/MDS-class.Rd man/NNMF-class.Rd man/PCA-class.Rd man/PCA_L1-class.Rd man/Q_NX-dimRedResult-method.Rd man/Q_global-dimRedResult-method.Rd man/Q_local-dimRedResult-method.Rd man/R_NX-dimRedResult-method.Rd man/UMAP-class.Rd man/as.data.frame.Rd man/as.dimRedData.Rd man/cophenetic_correlation-dimRedResult-method.Rd man/dataSets.Rd man/dimRed-package.Rd man/dimRedData-class.Rd man/dimRedMethod-class.Rd man/dimRedMethodList.Rd man/dimRedResult-class.Rd man/distance_correlation-dimRedResult-method.Rd man/embed.Rd man/getData.Rd man/getDimRedData.Rd man/getMeta.Rd man/getNDim.Rd man/getOrgData.Rd man/getOtherData.Rd man/getPars.Rd man/getRotationMatrix.Rd man/installSuggests.Rd man/kPCA-class.Rd man/makeKNNgraph.Rd man/maximize_correlation-dimRedResult-method.Rd man/mean_R_NX-dimRedResult-method.Rd man/mixColorRamps.Rd man/nMDS-class.Rd man/ndims.Rd man/plot.Rd man/plot_R_NX.Rd man/print.Rd man/quality.Rd man/reconstruction_error-dimRedResult-method.Rd man/reconstruction_rmse-dimRedResult-method.Rd man/tSNE-class.Rd man/total_correlation-dimRedResult-method.Rd tests/testthat.R tests/testthat/test_HLLE.R tests/testthat/test_NNMF.R tests/testthat/test_PCA.R tests/testthat/test_PCA_L1.R tests/testthat/test_UMAP.R tests/testthat/test_autoencoder.R tests/testthat/test_dataSets.R tests/testthat/test_diffusion_maps.R tests/testthat/test_dimRedData_class.R tests/testthat/test_dimRedMethod-class.R tests/testthat/test_dimRedResult_class.R tests/testthat/test_drr.R tests/testthat/test_embed.R tests/testthat/test_fastICA.R tests/testthat/test_high_level_functions.R tests/testthat/test_isomap.R tests/testthat/test_kPCA.R tests/testthat/test_misc_functions.R tests/testthat/test_quality.R vignettes/dimensionality-reduction.pdf