test_notes_check: Assume there is a valid note: > checking R code for possible...

In gdrplatform/gDRstyle: A package with style requirements for the gDR suite

Assume there is a valid note:

> checking R code for possible problems ... NOTE
mini_app: no visible binding for '<<-' assignment to ‘CONFIG’

and we want every other note in this section (and others) to fail check. Accepted NOTE has 2 lines, therefore the length = 2. Then we want to check whether the content of this NOTE is correct, so we take one of the lines (eg. index_to_check = 2) and grep for content of this line (eg. text_to_check = "assignment to" ) This will result in any other NOTE failing check Take:

  list(
    list(length = 2, index_to_check = 2, text_to_check = "assignment to")
  )
``
then following NOTE will be treated as invalid
> checking R code for possible problems ... NOTE
mini_app: no visible binding for '<<-' assignment to ‘CONFIG’
sandbox_app : sandboxUI: no visible binding for global variable
‘pcg_path’
Undefined global functions or variables:
 pcg_path

Description

Assume there is a valid note:

> checking R code for possible problems ... NOTE
mini_app: no visible binding for '<<-' assignment to ‘CONFIG’

and we want every other note in this section (and others) to fail check. Accepted NOTE has 2 lines, therefore the length = 2. Then we want to check whether the content of this NOTE is correct, so we take one of the lines (eg. index_to_check = 2) and grep for content of this line (eg. text_to_check = "assignment to" ) This will result in any other NOTE failing check Take:

  list(
    list(length = 2, index_to_check = 2, text_to_check = "assignment to")
  )
``
then following NOTE will be treated as invalid
> checking R code for possible problems ... NOTE
mini_app: no visible binding for '<<-' assignment to ‘CONFIG’
sandbox_app : sandboxUI: no visible binding for global variable
‘pcg_path’
Undefined global functions or variables:
 pcg_path

Usage

test_notes_check(check_results, bioccheck_results, valid_notes_list)

Value

NULL

gdrplatform/gDRstyle documentation built on March 31, 2024, 10:33 a.m.