Files in genevol-usp/hlaseqlib
R utility functions for the HLA RNAseq project
DESCRIPTION
LICENSE
NAMESPACE
R/calc_genotyping_accuracy.R
R/counts_to_fpkm.R
R/counts_to_tpm.R
R/fpkm_to_tpm.R
R/get_gencode_coords.R
R/hla_apply_zigosity_threshold.R
R/hla_compile_index.R
R/hla_genotype.R
R/hla_read_alignment.R
R/hla_readtx.R
R/hla_trimnames.R
R/phase_hla.R
R/read_phase.R
R/read_phase_probs.R
R/read_qtltools.R
R/read_qtltools_rtc.R
R/sysdata.rda
R/utils.R
README.md
data-raw/make_data.R
data-raw/mhc.tab
data-raw/parse_polypheme.R
data-raw/polypheme_calls.xlsx
data-raw/polypheme_plus_pag_calls.tsv
data/gencode_all_gene.rda
data/gencode_all_tx.rda
data/gencode_chr_gene.rda
data/gencode_chr_tx.rda
data/gencode_pri_gene.rda
data/gencode_pri_tx.rda
data/geuvadis_info.rda
data/pag.rda
data/polypheme_pag.rda
man/calc_genotyping_accuracy.Rd
man/counts_to_fpkm.Rd
man/counts_to_tpm.Rd
man/fpkm_to_tpm.Rd
man/get_gencode_coords.Rd
man/hla_apply_zigosity_threshold.Rd
man/hla_compile_index.Rd
man/hla_genotype.Rd
man/hla_read_alignment.Rd
man/hla_readtx.Rd
man/hla_trimnames.Rd
man/phase_hla.Rd
man/read_phase.Rd
man/read_phase_probs.Rd
man/read_qtltools.Rd
man/read_qtltools_rtc.Rd
