dotplot_compareClusterResult: Dotplot for compareClusterResult object

In genomics-kl/KLmisc: Various functions for genomic analyses

Dotplot for compareClusterResult object

Description

Dotplot for compareClusterResult object Provides more control over the plot than the method from clusterProfiler

Usage

dotplot_compareClusterResult(
  compareClusterResult,
  top_n = 5,
  facet_rgx = "\\S",
  facet_lvls = "foo",
  color = "p.adjust",
  size = "GeneRatio",
  xlab = "",
  ylab = "",
  fontsize = 12,
  title = "",
  cluster_lvls = 1:length(levels(droplevels(as_tibble(compareClusterResult)$Cluster))),
  print_clust_lvls = FALSE
)

Arguments

compareClusterResult	compareClusterResult object
top_n	numeric value for how many top gene sets to keep from each cluster
facet_rgx	character value for regex to str_extract from the 'Cluster' column for facetting
facet_lvls	character value for levels for facetting variable. Should correspond to 'facet_rgx'
color	character for variable for dot color aesthetic
size	character for variable for dot size aesthetic
xlab	x axis title
ylab	y axis title
fontsize	font size
title	plot title
cluster_lvls	numeric vector to rearrange the order of the cluster levels. Use 'print_clust_lvls' to figure out the original order of the cluster levels.
print_clust_lvls	Don't plot anything. Just print the cluster levels after dropping those with no results (significant results)

Value

GGplot object if print_clust_lvls set to FALSE

genomics-kl/KLmisc documentation built on Nov. 25, 2022, 6:39 p.m.