fastq_df: Per base sequence quality for 4 samples

In georgedashen/zhcweek5: Extract the values for a specific test run by FastQC on a single fastq file

Description

#' A dataset containing the base position, mean, median, lower quartile, upper quartile, 0th Percentile and 90th Percentile and sample names for 4 samples. WT1 technical replicates ERR458493, RR458494 And SNF2 technical replicates ERR458500, ERR459501.

Usage

fastq_df

Format

A data frame with 4*51 = 204 rows and 8 variables:

#Base

Base position (1 - 51)

Mean

Mean of quality of base in certain position(0 - 41)

Median

Median of quality of base in certain position(0 - 41)

Lower Quartile

Lower quartile of quality of base in certain position(0 - 41)

Upper Quartile

Upper quartile of quality of base in certain position(0 - 41)

10th Percentile

10th Percentile of quality of base in certain position(0 - 41)

90th Percentile

90th Percentile of quality of base in certain position(0 - 41)

sample

sample names

georgedashen/zhcweek5 documentation built on Feb. 10, 2020, 12:20 a.m.