API for gerstung-lab/BarrettsProgressionRisk
Prognositc adenocarcinoma risk prediction for Barrett's Esophagus
| Global functions | |
|---|---|
| .apply.rules | Source code |
| .bootstrap.coef.stderr | Source code |
| .get.legend | Source code |
| .mergeCountFiles | Source code |
| .plotSegmentedGenome | Man page Source code |
| .readFile | Source code |
| .risk | Source code |
| .rule.rx | Source code |
| .setUpRxTablePerEndo | Source code |
| .titleCase | Source code |
| absoluteRiskCI | Man page Source code |
| adjustRisk | Man page Source code |
| be.model.fit | Source code |
| chrInfo | Source code |
| copyNumberMountainPlot | Man page Source code |
| cvRR | Source code |
| generate.internal.be.model | Source code |
| get.loc | Source code |
| getMad | Source code |
| getcachedir | Source code |
| loadSampleInformation | Man page Source code |
| medianFilter | Source code |
| model.pred.confidence | Source code |
| mountainPlots | Source code |
| non.zero.coef | Source code |
| patientEndoscopyPlot | Man page Source code |
| patientRiskTilesPlot | Man page Source code |
| per.sample.error | Source code |
| pi.hat | Source code |
| plotCorrectedCoverage | Man page Source code |
| plotSegmentData | Man page Source code |
| predictRisk | Source code |
| predictRiskFromSegments | Man page Source code |
| predictions | Man page Source code |
| relativeRiskCI | Man page Source code |
| riskColors | Man page Source code |
| runQDNAseq | Man page Source code |
| rx | Man page Source code |
| rxRules | Man page |
| sampleNames | Man page Source code |
| sampleResiduals | Man page Source code |
| scoreCX | Man page |
| segmentRawData | Man page |
| segmentedValues | Man page Source code |
| showModelPredictions | Man page Source code |
| showPredictionCalibration | Man page Source code |
| subtractArms | Man page |
| tileSamples | Source code |
| tileSegments | Man page |
| unit.var | Source code |
