Tools for analyses on single-cell mass cytometry data, originally developed for the human FDA data set.
This package contains functions part of an R toolkit to query a server of cytometry data (note: base functions are all modifications of code originally written by ZBjornson). This includes getting a list of experiments, files, populations, gates, and statistics. NOTE: This has been moved to its own package in its own repo (blackbuck-R-toolkit)
This includes functions that will compile sets of queried statistics and annotations into organized data frames that are easy to parse. These are still being modified based on improvements to bulk statistics queries.
Contains markdowns chronicling the analysis of the datasets (analyses/analysis_markdowns)
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