display_density2d: Display tour path with a density and scatterplot

In ggobi/tourr: Tour Methods for Multivariate Data Visualisation

Display tour path with a density and scatterplot

Description

Animate a 2D tour path with density contour(s) and a scatterplot.

Usage

display_density2d(
  center = TRUE,
  axes = "center",
  half_range = NULL,
  col = "black",
  pch = 20,
  cex = 1,
  contour_quartile = c(0.25, 0.5, 0.75),
  edges = NULL,
  palette = "Zissou 1",
  ...
)

animate_density2d(data, tour_path = grand_tour(), ...)

Arguments

center	if TRUE, centers projected data to (0,0). This pins the center of data cloud and make it easier to focus on the changing shape rather than position.
axes	position of the axes: center, bottomleft or off
half_range	half range to use when calculating limits of projected. If not set, defaults to maximum distance from origin to each row of data.
col	color to use for points, can be a vector or hexcolors or a factor. Defaults to "black".
pch	shape of the point to be plotted. Defaults to 20.
cex	size of the point to be plotted. Defaults to 1.
contour_quartile	Vector of quartiles to plot the contours at. Defaults to 5.
edges	A two column integer matrix giving indices of ends of lines.
palette	name of color palette for point colour, used by hcl.colors, default "Zissou 1"
...	other arguments passed on to animate and display_density2d
data	matrix, or data frame containing numeric columns
tour_path	tour path generator, defaults to 2d grand tour

Examples

animate_density2d(flea[, 1:6])
animate(flea[, 1:6], tour_path = grand_tour(), display = display_density2d())
animate(flea[, 1:6],
  tour_path = grand_tour(),
  display = display_density2d(axes = "bottomleft")
)
animate(flea[, 1:6],
  tour_path = grand_tour(),
  display = display_density2d(half_range = 0.5)
)
animate_density2d(flea[, 1:6], tour_path = little_tour())

animate_density2d(flea[, 1:3], tour_path = guided_tour(holes()), sphere = TRUE)
animate_density2d(flea[, 1:6], center = FALSE)

# The default axes are centered, like a biplot, but there are other options
animate_density2d(flea[, 1:6], axes = "bottomleft")
animate_density2d(flea[, 1:6], axes = "off")
animate_density2d(flea[, 1:6], dependence_tour(c(1, 2, 1, 2, 1, 2)),
  axes = "bottomleft"
)

animate_density2d(flea[, -7], col = flea$species)

# You can also draw lines
edges <- matrix(c(1:5, 2:6), ncol = 2)
animate(
  flea[, 1:6], grand_tour(),
  display_density2d(axes = "bottomleft", edges = edges)
)

ggobi/tourr documentation built on April 23, 2024, 11:11 p.m.