In ggseg/ggsegYeo2011: Yeo 2011 Datasets for the 'ggseg'-Package

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%",
  fig.retina = 3
)

ggsegYeo2011

This package contains dataset for plotting the Yeo2011 cortical atlas ggseg and ggseg3d.

Yeo et al. (2011) J. Neurophysiology 16(3):1125-1165 pubmed

Installation

We recommend installing the ggseg-atlases through the ggseg r-universe:

# Enable this universe
options(repos = c(
    ggseg = 'https://ggseg.r-universe.dev',
    CRAN = 'https://cloud.r-project.org'))

# Install some packages
install.packages('ggsegYeo2011')

You can install the released version version from GitHub with:

# install.packages("remotes")
remotes::install_github("LCBC-UiO/ggsegYeo2011")

Example

This is a basic example which shows you how to solve a common problem:

library(ggsegYeo2011)

library(ggplot2)
library(ggseg)

plot(yeo7) +
  theme(legend.position = "bottom",
        legend.text = element_text(size = 9)) +
  guides(fill = guide_legend(ncol = 3))


plot(yeo17) +
  theme(legend.position = "bottom",
        legend.text = element_text(size = 9)) +
  guides(fill = guide_legend(ncol = 3))

library(ggseg3d)
library(dplyr)

ggseg3d(atlas = yeo7_3d) %>% 
  pan_camera("right lateral")
``

```r
library(ggseg3d)
library(dplyr)


p <- ggseg3d(atlas = yeo7_3d) %>%
  pan_camera("right lateral") %>%
  plotly::add_annotations( text="Screen capture",
                  legendtitle=TRUE, showarrow=FALSE,
                  font = list(color = "#000000b4",
                              family = 'sans serif',
                              size = 50))
plotly::orca(p, "man/figures/README-yeo7-3d-plot.png")

knitr::include_graphics("man/figures/README-yeo7-3d-plot.png")

ggseg3d(atlas = yeo17_3d) %>% 
  pan_camera("right lateral")

library(ggseg3d)

p <- ggseg3d(atlas = yeo17_3d) %>%
  pan_camera("right lateral") %>%
  plotly::add_annotations( text="Screen capture",
                  legendtitle=TRUE, showarrow=FALSE,
                  font = list(color = "#000000b4",
                              family = 'sans serif',
                              size = 50))
plotly::orca(p, "man/figures/README-yeo17-3d-plot.png")

knitr::include_graphics("man/figures/README-yeo17-3d-plot.png")

Please note that the 'ggsegYeo2011' project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

ggseg/ggsegYeo2011 documentation built on May 7, 2023, 7:31 a.m.