| FishtrapCr | Diel DO and PCO2 data from Fishtrap Creek | 
| get.CO2Sys.TAlk_pCO2 | Calculate carbonate system from alkalinity and pCO2 | 
| get.CO2Sys.TAlk_TCO2 | Calculate carbonate system from alkalinity and DIC | 
| get.G | Calculate net gas flux of CO2 or O2 | 
| get.K0 | Calculates Henery's constant (mol/L/atm) | 
| get.K1 | Calculates the first dissociation constant of carbonic acid... | 
| get.K2 | Calculates the second dissociation constant of carbonic acid... | 
| get.OH | Calculates the hydroxide concentration in water (mol/L) | 
| get.P | Calculates in situ gross primary production (umol/L/timestep) | 
| get.PAR | Estimates Photosynthetically Active Radiation at the Earth's... | 
| get.R | Calculates in situ respiration (umol/L/timestep) | 
| get.Sc | Returns Schmidt number for a specific gas at a given... | 
| kstd.to.kt | temp | 
| main | Main control function for runnning the model | 
| metabolism | Calculate ecosytem metabolism and its effect on dissolved O2... | 
| openApp | Open Shiny app to experiment with toy model | 
| plotLegend | temp | 
| plotO2_CO2 | temp | 
| plotpH_DIC | temp | 
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