gibbslab/ex2flux: Convert Gene EXPression Data to FBA FLUXes

For a given metabolic model with well formed Gene-Protein-Reaction (GPR) associations and an expressionSet with their associated gene expression values, this package converts gene expression values to the FBA boundaries for each reaction based in the boolean rules described in its associated GPR.

Getting started

Package details

AuthorDaniel Osorio[aut,cre], Kelly Botero[aut,cre], Janneth Gonzalez[aut], Andres Pinzon[aut]
MaintainerDaniel Osorio <[email protected]>
LicenseGPL-2
Version0.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("gibbslab/ex2flux")
gibbslab/ex2flux documentation built on May 14, 2017, 10:52 a.m.