gibbslab/g2f: Find and Fill Gaps in Metabolic Networks

For a given metabolic network, this package finds the gaps (metabolites not produced or not consumed in any other reaction), and fills it from the stoichiometric reactions of a reference metabolic reconstruction using a weighting function. Also the option to download all the set of gene-associated stoichiometric reactions for a specific organism from the KEGG database <> is available.

Getting started

Package details

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Installation Install the latest version of this package by entering the following in R:
gibbslab/g2f documentation built on May 17, 2019, 4:19 a.m.