gibbslab/g2f: Find and Fill Gaps in Metabolic Networks

For a given metabolic network, this package finds the gaps (metabolites not produced or not consumed in any other reaction), and fills it from the stoichiometric reactions of a reference metabolic reconstruction using a weighting function. Also the option to download all the set of gene-associated stoichiometric reactions for a specific organism from the KEGG database <http://www.genome.jp/kegg/> is available.

Getting started

Package details

Maintainer
LicenseGPL-2
Version0.3
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("gibbslab/g2f")
gibbslab/g2f documentation built on May 17, 2019, 4:19 a.m.