NEWS.md

In gibbslab/minval: MINimal VALidation for Stoichiometric Reactions

NEWS

minval v.0.8-2

• An error with the downloadChEBI function was solved. The error was caused by the new way used by the database to encode the NA compounds, previously was 'null' and now is NA.

minval v.0.8-1

• An error with the downloadChEBI function when it was used in Windows OS was solved.
• The citation file was added.
• The link with sybilSBML was removed due the package was removed from CRAN

minval v.0.8

• validateSyntax function now returns FALSE values instead error return
• Minor changes in writeSBMLmod function were made

minval v.0.7

• A bug related to unmapped metabolites in checkBalance function was solved

minval v.0.6

• downloadChEBI function was added. This function can download any user-defined release of the ChEBI database.
• checkBalance function now includes support for decimal coefficients in stoichiometric reactions.
• characterizeReactions function was added.
• The RECON 2.04 and an unbalanced Glycolysis model in a human-readable format were included.
• The writeTSV and writeSBML functions were rewritten, the XML package dependency was removed and the support to convert modelOrg objects was added.
• Two vignettes were included
• The orphanMetabolites function was included and the orphanReactants and orphanProducts functions were added as wrappers.

minval v.0.5

• All functions were vectorized
• Functions to write TSV and SBML models were added
• A function to download the different releases of the ChEBI database was added

minval v.0.4

• A bug in reactants function was solved. It also affected the orphan.reactants function.

minval v.0.3

• A bug in products function was solved
• A bug related with spaces between metabolites was solved in several functions

minval v.0.2

• Some functions were rewrited
• A bug in the compartments function was solved.

minval v.0.1

• ChEBI database release 136 was added.
• The stoichiometric reactions from the reconstructon of the glutamate/glutamine cycle were added.

gibbslab/minval documentation built on May 25, 2022, 5:20 a.m.