Files in gimelbrantlab/QCumber
Detects differential allelic imbalance from RNA-seq data
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
QCumber.Rproj
R/BuildDesign.R
R/ComputeAICIs.R
R/ComputeCorrConstantFor2Reps.R
R/ComputeCorrConstantsForAllPairsReps.R
R/CountsToAI.R
R/GetGatkPipelineTabs.R
R/LogFraction.R
R/MeanCoverage.R
R/MergeSumCounts.R
R/MixBetaBinomialFit.R
R/MixBetaBinomialFitStep.R
R/NameColumns.R
R/PerformBinTestAIAnalysisForConditionNPoint.R
R/PerformBinTestAIAnalysisForConditionNPointVect.R
R/PerformBinTestAIAnalysisForConditionNPointVect_knownCC.R
R/PerformBinTestAIAnalysisForConditionNPoint_knownCC.R
R/PerformBinTestAIAnalysisForTwoConditions.R
R/PerformBinTestAIAnalysisForTwoConditions_knownCC.R
R/ThresholdingCounts.R
README.md
data/allelicCountsTable.rda
man/BuildDesign.Rd
man/ComputeAICIs.Rd
man/ComputeCorrConstantFor2Reps.Rd
man/ComputeCorrConstantsForAllPairsReps.Rd
man/CountsToAI.Rd
man/GetGatkPipelineTabs.Rd
man/LogFraction.Rd
man/MeanCoverage.Rd
man/MergeSumCounts.Rd
man/MixBetaBinomialFit.Rd
man/MixBetaBinomialFitStep.Rd
man/NameColumns.Rd
man/PerformBinTestAIAnalysisForConditionNPoint.Rd
man/PerformBinTestAIAnalysisForConditionNPointVect.Rd
man/PerformBinTestAIAnalysisForConditionNPointVect_knownCC.Rd
man/PerformBinTestAIAnalysisForConditionNPoint_knownCC.Rd
man/PerformBinTestAIAnalysisForTwoConditions.Rd
man/PerformBinTestAIAnalysisForTwoConditions_knownCC.Rd
man/ThresholdingCounts.Rd
