getBioassaySetByCids | R Documentation |
bioassaySet
sparse matrix object with activity data only for specified compounds
Takes a list of compounds, and creates a bioassaySet
sparse matrix object with the activity data
for these compounds only, not including activity data from other compounds in the same assays.
getBioassaySetByCids(database, cids)
database |
A |
cids |
One or more compounds IDs of interest. |
A bioassaySet
object containing data from the specified cids.
Tyler William H Backman
## connect to a test database extdata_dir <- system.file("extdata", package="bioassayR") sampleDatabasePath <- file.path(extdata_dir, "sampleDatabase.sqlite") sampleDB <- connectBioassayDB(sampleDatabasePath) ## retrieve activity data on 3 compounds activitySet <- getBioassaySetByCids(sampleDB, c("2244","3715","237")) activitySet ## disconnect from sample database disconnectBioassayDB(sampleDB)
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