Description Details Author(s) Examples
The package consists of two main functions, fmcs
which computes the flexible MCS between two SDF
objects. And fmcsBatch
runs the FMCS algorithm on a SDFset
.
Package: | fmcsR |
Type: | Package |
Version: | 1.0 |
Date: | 2012-02-01 |
Yan Wang
Maintainer: Yan Wang <wangya@cs.ucr.edu>
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | library(fmcsR)
data(sdfsample)
sdfset <- sdfsample
result1 <- fmcs(sdfset[[1]], sdfset[[2]])
result2 <- fmcs(sdfset[[1]], sdfset[[2]], au=3)
result3 <- fmcs(sdfset[[1]], sdfset[[2]], bu=3)
result4 <- fmcs(sdfset[[1]], sdfset[[2]], au=1, bu=1)
result5 <- fmcs(sdfset[[1]], sdfset[[2]], matching.mode="aromatic")
result6 <- fmcs(sdfset[[1]], sdfset[[2]], au=2, bu=1, matching.mode="aromatic")
fmcsBatch(sdfset[[1]], sdfset[1:3])
fmcsBatch(sdfset[[1]], sdfset[1:3], au=2)
fmcsBatch(sdfset[[1]], sdfset[1:3], bu=1)
fmcsBatch(sdfset[[1]], sdfset[1:3], matching.mode="aromatic", au=1, bu=1)
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