API for githubmpc/marimba2
Gibbs sampler for genotyping CNPs

Global functions
balance_cn Source code
calc.BIC Source code
calc.DIC Source code
child_stats Source code
classifyBayesMixture Man page Source code
cnProb Source code
cn_adjust Source code
componentStats Source code
component_stats Source code
compute_loglik Source code
credible.interval Source code
credible.interval.quantile Source code
current_summary Source code
diagnostics Source code
dim.reduct Source code
dnorm_model Source code
dnorm_poly Source code Source code
dnorm_quantiles Source code
ess.compile Source code
gMendelian Source code
gelman_rubin Source code
geneticParams Source code
gg_chains Source code
gg_cnp Source code
gg_inten.comparison1 Source code
gg_inten.comparison2 Source code
gg_model Source code
gg_prob.comparison Source code
gg_truth Source code
gibbs Source code
gibbs.cnv.call Source code
gibbs.results Source code
gibbs_burnin Source code
gibbs_genetic Source code
gibbs_genetic2 Source code
gmodel Source code
gmodel2 Source code
gmodel_mcmc Source code
gmodel_oneiter Source code
init.offspring.cn Source code
init.pi.child Source code
initialize_chains Man page Source code
initialize_gmodel Source code
kmean_clusters Source code
kmean_clusters.add Source code
label_switch Source code
longFormat Source code
lookup_prob Source code
map_cn2 Man page Source code
marimba Man page
marimba-package Man page
mcmcList Source code
mcmcParams Source code
mendelianProb Source code
missingCnState Source code
model.compare Source code
mprob.label Source code
mprob.matrix Source code
mprob.subset Source code
multipleStarts Source code
nit Source code
nit2 Source code
p_offspring Source code
parent_stats Source code
posterior_difference Source code
posterior_summary Source code
rMultinom2 Source code
rMultinom3 Source code
replaceIfMissing Source code
selectModels Source code
setMcmcParams Source code
set_param_names Source code
simulate_data Source code Source code
simulate_data.env1 Source code
simulate_data.env2 Source code
startAtTrueValues Source code
statistics_1000g Source code
unlistModels Source code
updateTransmissionProb Source code
update_chains Source code
update_cn Source code
update_mendel Source code
update_offspring Source code
update_p Source code
update_parents Source code
update_sigma Source code
update_tau Source code
update_tau.env Source code
update_tau.intermed Source code
update_theta Source code
githubmpc/marimba2 documentation built on Oct. 19, 2017, 6:22 p.m.