print.subex: Printing a Summary of Subsampling-Extrapolation Results

In gitlongor/pi0: Estimating the Proportion of True Null Hypotheses for FDR

Description

This function prints out a summary of a subt object.

Usage

## S3 method for class 'subex'
print(x,...)
## S3 method for class 'subex'
summary(object,...)

Arguments

x,object	the subex object, for which to print summaries.
...	ignored.

Details

This function will first print a summary of the corresponding extrpi0 object. Then several quantiles of the p-values and q-values are printed.

Value

an invisible(NULL), used only for its side effects.

Author(s)

Long Qu

References

Qu, L., Nettleton, D., Dekkers, J.C.M. Subsampling Based Bias Reduction in Estimating the Proportion of Differentially Expressed Genes from Microarray Data. Unpublished manuscript.

See Also

subex, extrp.pi0, print.extrpi0, fdr

Examples

## Not run: 
set.seed(9992722)
## this is how the 'simulatedDat' data set in this package generated
simulatedDat=sim.dat(G=5000)
## this is how the 'simulatedSubex' data set in this package generated
simulatedSubex=subex(simulatedDat,balanced=FALSE,max.reps=Inf)

## End(Not run)
data(simulatedSubex)
summary(simulatedSubex)

gitlongor/pi0 documentation built on May 17, 2019, 5:29 a.m.