Files in giulianonetto/bayesdca
Bayesian Decision Curve Analysis
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DESCRIPTION
LICENSE.md
NAMESPACE
R/bayesDCA-package.R
R/data.R
R/dca.R
R/dca_surv.R
R/fake_data_simulation.R
R/plotting.R
R/stanmodels.R
R/utils.R
README.Rmd
README.md
_pkgdown.yml
bayesDCA.Rproj
configure
configure.win
data/Docking2021Data.rda
data/PredModelData.rda
data/dca_survival_data.rda
docs/404.html
docs/LICENSE.html
docs/articles/index.html
docs/articles/survival-outcomes.html
docs/articles/survival-outcomes_files/figure-html/unnamed-chunk-3-1.png
docs/articles/survival-outcomes_files/figure-html/unnamed-chunk-4-1.png
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docs/articles/survival-outcomes_files/figure-html/unnamed-chunk-6-1.png
docs/articles/survival-outcomes_files/figure-html/unnamed-chunk-7-1.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
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docs/deps/data-deps.txt
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docs/docsearch.css
docs/docsearch.js
docs/extra.css
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/preferably.css
docs/reference/Docking2021Data.html
docs/reference/PredModelData.html
docs/reference/Rplot001.png
docs/reference/bayesDCA-package.html
docs/reference/compare_dca-1.png
docs/reference/compare_dca.html
docs/reference/dca-1.png
docs/reference/dca.html
docs/reference/dca_surv-1.png
docs/reference/dca_surv.html
docs/reference/dca_survival_data.html
docs/reference/dot-dca_binary.html
docs/reference/dot-dca_stan_list.html
docs/reference/dot-dca_stan_surv.html
docs/reference/dot-dca_stan_surv_weibull.html
docs/reference/dot-extract_dca_draws.html
docs/reference/dot-extract_dca_summary.html
docs/reference/dot-extract_dca_surv_draws.html
docs/reference/dot-extract_dca_surv_summary.html
docs/reference/dot-get_constant_prior_parameters.html
docs/reference/dot-get_nonconstant_prior_parameters.html
docs/reference/dot-get_prior_parameters.html
docs/reference/dot-get_relevant_pars.html
docs/reference/dot-get_thr_data_list.html
docs/reference/dot-get_threshold_varying_prior_parameters.html
docs/reference/evpi.html
docs/reference/evpi_old.html
docs/reference/extract_dca_draws.html
docs/reference/extract_dca_summary.html
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docs/reference/get_colors_and_labels.html
docs/reference/get_cutpoints.html
docs/reference/get_delta_plot_data_binary.html
docs/reference/get_delta_plot_data_surv.html
docs/reference/get_events_per_interval.html
docs/reference/get_positivity_posterior_parameters.html
docs/reference/get_prior_parameters.html
docs/reference/get_prior_sample_size.html
docs/reference/get_prior_se_mu.html
docs/reference/get_prior_sp_mu.html
docs/reference/get_superiority_prob_plot_data_binary.html
docs/reference/get_superiority_prob_plot_data_surv.html
docs/reference/get_survival_posterior_parameters.html
docs/reference/get_survival_time_exposed.html
docs/reference/get_thr_data.html
docs/reference/get_thr_data_list.html
docs/reference/index.html
docs/reference/min_events_per_interval.html
docs/reference/plot.BayesDCA.html
docs/reference/plot.BayesDCAList.html
docs/reference/plot.BayesDCASurv.html
docs/reference/plot_classification.html
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docs/reference/plot_superiority_prob-1.png
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docs/reference/print.BayesDCA.html
docs/reference/print.BayesDCAList.html
docs/reference/print.BayesDCASurv.html
docs/reference/simulate_diagnostic_test_data.html
docs/reference/simulate_prognostic_model_data.html
docs/search.json
docs/sitemap.xml
index.Rmd
index.md
inst/CITATION
inst/doesitwork/Docking2021Data.tsv
inst/doesitwork/analysis_list.rds
inst/doesitwork/continuous-test.Rmd
inst/doesitwork/doesitwork_short.Rmd
inst/doesitwork/performance-cpm.Rmd
inst/include/stan_meta_header.hpp
inst/stan/dca_survival_weibull.stan
inst/stan/include/license.stan
inst/tmp/tmp.R
install_this.R
man/Docking2021Data.Rd
man/PredModelData.Rd
man/bayesDCA-package.Rd
man/compare_dca.Rd
man/dca.Rd
man/dca_surv.Rd
man/dca_survival_data.Rd
man/dot-dca_binary.Rd
man/dot-dca_stan_surv_weibull.Rd
man/dot-extract_dca_summary.Rd
man/dot-extract_dca_surv_draws.Rd
man/dot-extract_dca_surv_summary.Rd
man/dot-get_constant_prior_parameters.Rd
man/dot-get_prior_parameters.Rd
man/dot-get_relevant_pars.Rd
man/dot-get_thr_data_list.Rd
man/dot-get_threshold_varying_prior_parameters.Rd
man/evpi.Rd
man/figures/README-unnamed-chunk-4-1.png
man/figures/README-unnamed-chunk-5-1.png
man/figures/README-unnamed-chunk-6-1.png
man/figures/README-unnamed-chunk-7-1.png
man/figures/README-unnamed-chunk-8-1.png
man/figures/README-unnamed-chunk-9-1.png
man/get_colors_and_labels.Rd
man/get_cutpoints.Rd
man/get_delta_plot_data_binary.Rd
man/get_delta_plot_data_surv.Rd
man/get_events_per_interval.Rd
man/get_positivity_posterior_parameters.Rd
man/get_superiority_prob_plot_data_binary.Rd
man/get_superiority_prob_plot_data_surv.Rd
man/get_survival_time_exposed.Rd
man/plot.BayesDCA.Rd
man/plot.BayesDCASurv.Rd
man/plot_delta.Rd
man/plot_evpi.Rd
man/plot_ppc.Rd
man/plot_superiority_prob.Rd
man/print.BayesDCA.Rd
man/print.BayesDCASurv.Rd
man/simulate_diagnostic_test_data.Rd
man/simulate_prognostic_model_data.Rd
tests/testthat.R
tests/testthat/test-data.R
tests/testthat/test-dca.R
tests/testthat/test-dca_list.R
tests/testthat/test-dca_surv.R
tests/testthat/test-fake_data_simulation.R
tests/testthat/test-plotting.R
vignettes/survival-outcomes.Rmd
