cfm_read_db: Read CFM precomputed spectra from a database created by...
In gjgetzinger/cfmR: R Wrapper for calling the Competitive Fragmentation Modeling for Metabolite Identifiction (CFM-ID) algorithm
Description
Usage
Arguments
Value
Description
Read CFM precomputed spectra from a database created by cfm_read_batch
Usage
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cfm_read_db(
db_file = NULL,
table_name = NULL,
ID = NULL,
return_annotation = F
)
Arguments
db_file
[string] Full path to the database file
table_name
[string] Name of table containing the CFM spectra to read
ID
[string] A vector of ID(s) to retrieve from the database
return_annotation
[logical] Should spectra be returned with annotations
Value
A named list of spectra when selected table contains a column named
'spectrum'. Otherwise a tibble.
gjgetzinger/cfmR documentation built on May 11, 2020, 1 p.m.
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Description Usage Arguments Value
Description
Read CFM precomputed spectra from a database created by cfm_read_batch
Usage
1 2 3 4 5 6 | cfm_read_db(
db_file = NULL,
table_name = NULL,
ID = NULL,
return_annotation = F
)
|
Arguments
db_file |
[string] Full path to the database file |
table_name |
[string] Name of table containing the CFM spectra to read |
ID |
[string] A vector of ID(s) to retrieve from the database |
return_annotation |
[logical] Should spectra be returned with annotations |
Value
A named list of spectra when selected table contains a column named 'spectrum'. Otherwise a tibble.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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