API for gjuggler/ggphylo
Tools for laying out and plotting phylogenetic data (trees and alignments) with ggplot.
| Global functions | |
|---|---|
| GeomJoinedSegment | Man page |
| as.character.phylo | Man page |
| as.data.frame.phylo | Man page |
| checkLabel | Man page |
| clado.build | Man page |
| geom_joinedsegment | Man page |
| ggphylo | Man page |
| ggphylo-package | Man page |
| is.leaf.phylo | Man page |
| is.tree | Man page |
| label.phylo | Man page |
| labels.phylo | Man page |
| leaves | Man page |
| nodes | Man page |
| order.nodes.visually | Man page |
| package-ggphylo | Man page |
| sort.df.by.tree | Man page |
| tags.into.df | Man page |
| tags.phylo | Man page |
| tags.to.nhx.string | Man page |
| theme_phylo_black | Man page |
| theme_phylo_blank | Man page |
| tree.apply.branchlengths | Man page |
| tree.as.data.frame | Man page |
| tree.branch.length | Man page |
| tree.child.nodes | Man page |
| tree.depth.to.root | Man page |
| tree.extract.clade | Man page |
| tree.extract.subtree | Man page |
| tree.find | Man page |
| tree.foreach | Man page |
| tree.get.label | Man page |
| tree.get.root | Man page |
| tree.get.tag | Man page |
| tree.get.tags | Man page |
| tree.has.tags | Man page |
| tree.is.leaf | Man page |
| tree.label.for.node | Man page |
| tree.layout | Man page |
| tree.leaves.beneath | Man page |
| tree.length.to.root | Man page |
| tree.lengths.to.root | Man page |
| tree.load.data | Man page |
| tree.max.length.to.root | Man page |
| tree.mean.path.length | Man page |
| tree.node.with.label | Man page |
| tree.normalize.branchlengths | Man page |
| tree.parent.node | Man page |
| tree.read | Man page |
| tree.read.nhx | Man page |
| tree.remove.leaf | Man page |
| tree.remove.node.labels | Man page |
| tree.scale.by | Man page |
| tree.scale.to | Man page |
| tree.set.label | Man page |
| tree.set.tag | Man page |
| tree.strip.branchlengths | Man page |
| tree.tags.to.labels | Man page |
| tree.to.string | Man page |
| tree.total.branch.length | Man page |
| tree.translate | Man page |
| write.nhx | Man page |
