tree.translate: Translates all labels in the tree based on a list of label...
In gjuggler/ggphylo: Tools for laying out and plotting phylogenetic data (trees and alignments) with ggplot.
Description
Usage
Arguments
Value
Examples
Description
Translates all labels in the tree based on a list of
label mappings.
Usage
1
tree.translate(phylo, map)
Arguments
phylo
input phylo object
map
a list of key-value pairs by which to
translate node labels
Value
phylo, the original tree with all matching labels mapped
to their new values.
Examples
1
2
3
4
5
# Translate a tree of NCBI taxa to their common names
taxon.tree <- tree.read('((9606,9598),9593);')
taxon.map <- list('9606'='Human', '9598'='Chimpanzee', '9593'='Gorilla')
readable.tree <- tree.translate(taxon.tree, taxon.map)
print(as.character(readable.tree)) # ((Human,Chimpanzee),Gorilla)
gjuggler/ggphylo documentation built on May 17, 2019, 6:05 a.m.
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Description Usage Arguments Value Examples
Description
Translates all labels in the tree based on a list of label mappings.
Usage
1 | tree.translate(phylo, map)
|
Arguments
phylo |
input phylo object |
map |
a list of key-value pairs by which to translate node labels |
Value
phylo, the original tree with all matching labels mapped to their new values.
Examples
1 2 3 4 5 | # Translate a tree of NCBI taxa to their common names
taxon.tree <- tree.read('((9606,9598),9593);')
taxon.map <- list('9606'='Human', '9598'='Chimpanzee', '9593'='Gorilla')
readable.tree <- tree.translate(taxon.tree, taxon.map)
print(as.character(readable.tree)) # ((Human,Chimpanzee),Gorilla)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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