plot.varexp.ci: Plot approximate posterior credible intervals of proportion...

In gkeele/Diploffect.INLA: INLA Implementation of the Diploffect Model

Plot approximate posterior credible intervals of proportion variance explained (PVE) as a caterpillar plot

Description

This function takes a Diploffect.INLA summary object and plots the posterior credible intervals of the proportion of the variance explained.

Usage

## S3 method for class 'varexp.ci'
plot(
  inla.diploffect.ci,
  xlab = "Variance Explained",
  main = NULL,
  main.cex = 1,
  main.line = 2,
  add.numbers = FALSE,
  ...
)

Arguments

inla.diploffect.ci	A Diploffect.INLA summary object. Output from run.diploffect.inla.summary.stats(). Contains credible information for various model parameters.
xlab	DEFAULT: "Variance Explained". Label for the x axis of the plot.
add.numbers	DEFAULT: FALSE. Adds numeric summaries next to intervals.

Value

Nothing. Produces plot.

Examples

library(Diploffect.INLA)
data(exampleCC)
data(locusmatrix)
inla.diploffect <- run.diploffect.inla(formula=y~1+(1|strain)+(1|dose.date), add.on=FALSE, data=exampleCC, K=NULL,
                                       prob.matrix=locusmatrix,
                                       num.draws=10, 
                                       use.dip.lincomb=TRUE, seed=1, gamma.rate=1, impute.on="CCline")
inla.diploffect.summary <- run.diploffect.inla.summary.stats(inla.diploffect)
plot.varexp.ci(inla.diploffect.summary, add.numbers=TRUE)

gkeele/Diploffect.INLA documentation built on May 17, 2023, 8:37 a.m.