extract.r2.interval: Calculate the r^2 (squared correlation coefficient) between...
In gkeele/kqtl: Suite of QTL Mapping Functions
Description
Usage
Arguments
Examples
Description
This function primarily takes a formula, data frame, genome cache, and directory of founder strain
.alleles files to calculate the pairwise r^2 between all individual markers and a specified
locus, likely the peak SNP.
Usage
1
extract.r2.interval(scan.object, r2.scan.object, r2.level = 0.6)
Arguments
scan.object
An SNP scan object produced by imputed.snp.scan.h2lmm().
r2.scan.object
An r^2 object produced by pairwise.cor.snp.scan().
r2.level
DEFAULT: 0.6. The r^2 cutpoint. Returns the position interval includes loci with
r^2 ≥ r2.level.
Examples
1
gkeele/kqtl documentation built on May 17, 2019, 6:06 a.m.
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Description Usage Arguments Examples
Description
This function primarily takes a formula, data frame, genome cache, and directory of founder strain .alleles files to calculate the pairwise r^2 between all individual markers and a specified locus, likely the peak SNP.
Usage
1 | extract.r2.interval(scan.object, r2.scan.object, r2.level = 0.6)
|
Arguments
scan.object |
An SNP scan object produced by imputed.snp.scan.h2lmm(). |
r2.scan.object |
An r^2 object produced by pairwise.cor.snp.scan(). |
r2.level |
DEFAULT: 0.6. The r^2 cutpoint. Returns the position interval includes loci with r^2 ≥ r2.level. |
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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