README.md

In glin/brgedata: Exposures, Gene Expression and Methylation data for ilustration purpouses

BRGEdata

BRGEdata in a data-R package that includes a collection of BRGE omic and exposome data.

Data available in this R package:

| Data Type | Number of Samples | Number of Features | Technology | File Name | Object Name | Class | | :------------ | ----------------: | -----------------: | :------------------------------ | :--------------- | :----------- | :---------------- | | Exposome | 110 | 15 | | brge_expo.rda | brge_expo | ExposomeSet | <<<<<<< HEAD | Transcriptome | 100 | 67528 | Affymetrix HTA 2.0 | brge_gexp.rda | brge_gexp | ExpressionSet | | Methylome | 20 | 476946 | Illumina Human Methylation 450K | brge_methy.rda | brge_methy | GenomicRatioSet | ======= | Transcriptome | 75 | 67528 | Affymetrix HTA 2.0 | brge_gexp.rda | brge_gexp | ExpressionSet | | Methylome | 115 | 476946 | Illumina Human Methylation 450K | brge_methy.rda | brge_methy | GenomicRatioSet |

upstream/master | Proteome | 90 | 47 | | brge_prot.rda | brge_prot | ExpressionSet |

The phenotype data corresponding to the samples was included in each set:

• sex
• age

Moreover, the ExposomeSet includes:

• asthma status
• rhinitis status

The following table indicates the source of each class includeid in BRGdata data-R package:

| Class | Source |:------------------|:------------------------------------------------------------------------------| | ExposomeSet | rexposome | | ExpressionSet | Biobase | | GenomicRatioSet | minfi |

glin/brgedata documentation built on Jan. 1, 2021, 2:22 a.m.