panel.metaCount: Panel Function for Counting Events by category

In gmbecker/ProteinVis: Protein/Mutation Visualization

Description

metaCount Panel Function

Arguments

x	Provided by lattice
y	Provided by lattice
end	Vector containing the ending positions of the events being counted. For point events, the vector should contain NA
subscripts	Provided by lattice
patientid	Data indicating the patient/sample an observation came from
scale.factor	Numeric. Indicates maximum height of a bar (for values to be
logscale	Logical. If TRUE heights of count bars are in capped log scale. Defaults to TRUE
logbase	Numeric. Indicates the base of the log to use if logscale = TRUE. Ignored if logscale=FALSE. Defaults to 1.5.
at.baseline	Logical. If TRUE all count bars for a single category have their base at the same point. If FALSE, bars are centered in the area of the plot indicating their respective category. Defaults to TRUE
colpalette	Color palette to use in the counting portion of the plot. Color is used to indicate relative frequency. Should be a character vector containing hex color specifications.
legend.step	Numeric. Step size used to differentiate between colors in colpalette.
...	Unused.

Details

This is designed to be a panel function for use inside a lattice plotting function call.

Value

Not meaningful

Author(s)

Gabriel Becker

gmbecker/ProteinVis documentation built on May 17, 2019, 6:42 a.m.