Global functions | |
---|---|
.annDESC | Source code |
.biocTryToDL | Source code |
.descInTB | Source code |
.detectType | Source code |
.dodepsourselves | Source code |
.domessage | Source code |
.filldfcols | Source code |
.findIt | Source code |
.findThem | Source code |
.getDepsThing | Source code |
.getEmptyTempDir | Source code |
.getExt | Source code |
.grabdeps | Source code |
.inferDefaultBranch | Source code |
.inferType | Source code |
.innerdodeps | Source code |
.install_packages | Source code |
.libPaths2 | Man page Source code |
.newestPkgVersion | Source code |
.onLoad | Source code |
.winFileFromURL | Source code |
.winFileURL | Source code |
BiocDevel | Man page |
BiocRelease | Man page |
BiocSVNManifest | Man page Source code |
BiocSource-class | Man page |
BiocVers | Man page Source code |
CRANSource-class | Man page |
CVSSource-class | Man page |
GitSource-class | Man page |
GithubManifest | Man page Source code |
GithubSource-class | Man page |
LibraryProfile | Source code |
LibraryProfile-class | Man page |
LocalSource-class | Man page |
ManifestRow | Man page Source code |
PkgManifest | Man page Source code |
PkgManifest-class | Man page |
PkgSource-class | Man page |
RepoSubset | Man page Source code |
RepoSubset-class | Man page |
SVNSource-class | Man page |
SessionManifest | Man page Source code |
SessionManifest-class | Man page |
SwitchrCtx | Man page Source code |
SwitchrCtx-class | Man page |
SwitchrParam | Man page Source code |
SwitchrParam-class | Man page |
TarballSource-class | Man page |
addPkg | Man page |
addPkg,PkgManifest | Man page |
addPkg,PkgManifest-method | Man page |
addPkg,SessionManifest | Man page |
addPkg,SessionManifest-method | Man page |
addReplaceDF | Source code |
allBiocReleases | Source code |
annotateDESCs | Source code |
archive_retries | Man page |
archive_retries,SwitchrParam | Man page |
archive_retries,SwitchrParam-method | Man page |
archive_retries<- | Man page |
archive_retries<-,SwitchrParam | Man page |
archive_retries<-,SwitchrParam-method | Man page |
archive_timing | Man page |
archive_timing,SwitchrParam | Man page |
archive_timing,SwitchrParam-method | Man page |
archive_timing<- | Man page |
archive_timing<-,SwitchrParam | Man page |
archive_timing<-,SwitchrParam-method | Man page |
beforeBiocInstaller | Source code |
binRevSearch | Source code |
biocReposForVers | Man page Source code |
biocReposFromVers | Source code |
biocVersAsGitBr | Source code |
biocVersFromRepo | Source code |
biocreposfactory | Source code |
branch | Man page |
branch,PkgSource | Man page |
branch,PkgSource-method | Man page |
branch<- | Man page |
branch<-,PkgSource | Man page |
branch<-,PkgSource-method | Man page |
buildTarURLs | Source code |
c,PkgManifest-method | Man page |
c,SessionManifest-method | Man page |
checkIsPkgDir | Man page |
checkStdSVN | Source code |
cleanem | Source code |
const_git_url | Source code |
consumeOrgSummary | Source code |
cranPkgVersManifest | Man page Source code |
currentCompEnv | Man page Source code |
decrBiocRepo | Source code |
decrBiocVersion | Source code |
defaultRepos | Man page Source code |
dep_repos | Man page |
dep_repos,PkgManifest | Man page |
dep_repos,PkgManifest-method | Man page |
dep_repos,SessionManifest | Man page |
dep_repos,SessionManifest-method | Man page |
dep_repos<- | Man page |
dep_repos<-,PkgManifest | Man page |
dep_repos<-,PkgManifest-method | Man page |
dep_repos<-,SessionManifest | Man page |
dep_repos<-,SessionManifest-method | Man page |
dl_method | Man page |
dl_method,SwitchrParam | Man page |
dl_method,SwitchrParam-method | Man page |
dl_method<- | Man page |
dl_method<-,SwitchrParam | Man page |
dl_method<-,SwitchrParam-method | Man page |
download.file2 | Source code |
download.packages2 | Source code |
doyamlsetup | Source code |
ensureCRANmirror | Source code |
errorOrNonZero | Man page Source code |
fileFromBuiltPkg | Source code |
fileFromFileURL | Man page Source code |
findBiocGitRev | Source code |
findBiocSVNRev | Source code |
findCompEnv | Source code |
findGitRev | Source code |
findNewestPkgInds | Man page Source code |
findNewestPkgRows | Man page Source code |
findPkgDir | Man page Source code |
findPkgVersionInBioc | Source code |
findPkgVersionInCRAN | Source code |
findPkgVersionInManifest | Source code |
findPkgVersionInRepo | Man page |
findPkgVersionInRepo,NULL | Man page |
findPkgVersionInRepo,NULL-method | Man page |
findPkgVersionInRepo,character | Man page |
findPkgVersionInRepo,character-method | Man page |
findSVNRev | Source code |
flushSession | Man page Source code |
full_libpaths | Man page |
full_libpaths,SwitchrCtx | Man page |
full_libpaths,SwitchrCtx-method | Man page |
getBiocDevelVr | Source code |
getBiocReleaseVr | Source code |
getBiocRepos | Source code |
getBiocReposFromRVers | Source code |
getBiocvrFromRvr | Source code |
getMultilineYamlField | Source code |
getNextLinkURL | Source code |
getOrgSummary | Source code |
getPkgDir | Man page Source code |
getPkgs | Source code |
getPlatform | Source code |
getRVersion | Source code |
getRemoteBranches | Source code |
getStringType | Source code |
getWithCache | Source code |
gitChangeBranch | Source code |
gitCurrentBranch | Source code |
gitWDIsDirty | Source code |
globalVariables | Source code |
gotoVersCommit | Man page |
gotoVersCommit,character,BiocSource | Man page |
gotoVersCommit,character,BiocSource-method | Man page |
gotoVersCommit,character,CRANSource | Man page |
gotoVersCommit,character,CRANSource-method | Man page |
gotoVersCommit,character,GitSource | Man page |
gotoVersCommit,character,GitSource-method | Man page |
gotoVersCommit,character,SVNSource | Man page |
gotoVersCommit,character,SVNSource-method | Man page |
graceful_inet | Man page |
graceful_inet_constr | Source code |
graceful_inet_on | Source code |
haveGit | Source code |
haveSVN | Source code |
head | Man page |
head,PkgManifest | Man page |
head,PkgManifest-method | Man page |
head,SessionManifest | Man page |
head,SessionManifest-method | Man page |
highestBiocVers | Source code |
inet_handlers | Source code |
install_packages | Man page |
install_packages,SessionManifest,ANY | Man page |
install_packages,SessionManifest,ANY-method | Man page |
install_packages,character,PkgManifest | Man page |
install_packages,character,PkgManifest-method | Man page |
install_packages,character,SessionManifest | Man page |
install_packages,character,SessionManifest-method | Man page |
install_packages,character,character | Man page |
install_packages,character,character-method | Man page |
install_packages,character,missing | Man page |
install_packages,character,missing-method | Man page |
isCurrentDevelVr | Source code |
isWindows | Source code Source code |
lazyRepo | Man page |
lazyRepo,PkgManifest,ANY | Man page |
lazyRepo,PkgManifest,ANY-method | Man page |
lazyRepo,SessionManifest,ANY | Man page |
lazyRepo,SessionManifest,ANY-method | Man page |
lazyRepo,character,PkgManifest | Man page |
lazyRepo,character,PkgManifest-method | Man page |
lazyRepo,character,SessionManifest | Man page |
lazyRepo,character,SessionManifest-method | Man page |
libManifest | Man page |
libManifest,SwitchrCtx | Man page |
libManifest,SwitchrCtx-method | Man page |
libManifest,character | Man page |
libManifest,character-method | Man page |
libManifest,missing | Man page |
libManifest,missing-method | Man page |
library_paths | Man page |
library_paths,SwitchrCtx | Man page |
library_paths,SwitchrCtx-method | Man page |
list.dirs | Source code |
loadGRAN | Man page Source code |
loadManifest | Man page Source code |
locatePkgVersion | Man page Source code |
location | Man page |
location,PkgSource-method | Man page |
logfun | Man page |
logfun,SwitchrParam | Man page |
logfun,SwitchrParam-method | Man page |
logfun<- | Man page |
logfun<-,SwitchrParam | Man page |
logfun<-,SwitchrParam-method | Man page |
makeBiocSVNURL | Man page Source code |
makeFileURL | Man page Source code |
makeGitPkgSource | Source code |
makeLibraryCtx | Man page Source code |
makeManifest | Man page Source code |
makePkgCheckout | Man page Source code |
makePkgDir | Man page |
makePkgDir,ANY,ANY | Man page |
makePkgDir,ANY,ANY-method | Man page |
makePkgDir,ANY,BiocSource | Man page |
makePkgDir,ANY,BiocSource-method | Man page |
makePkgDir,ANY,CRANSource | Man page |
makePkgDir,ANY,CRANSource-method | Man page |
makePkgDir,ANY,GitSource | Man page |
makePkgDir,ANY,GitSource-method | Man page |
makePkgDir,ANY,GithubSource | Man page |
makePkgDir,ANY,GithubSource-method | Man page |
makePkgDir,ANY,LocalSource | Man page |
makePkgDir,ANY,LocalSource-method | Man page |
makePkgDir,ANY,SVNSource | Man page |
makePkgDir,ANY,SVNSource-method | Man page |
makePkgDir,ANY,TarballSource | Man page |
makePkgDir,ANY,TarballSource-method | Man page |
makePwdFun | Source code |
makeSearchURL | Source code |
makeSeedMan | Man page |
makeSeedMan,data.frame | Man page |
makeSeedMan,data.frame-method | Man page |
makeSeedMan,missing | Man page |
makeSeedMan,missing-method | Man page |
makeSeedMan,parsedSessionInfo | Man page |
makeSeedMan,parsedSessionInfo-method | Man page |
makeSeedMan,sessionInfo | Man page |
makeSeedMan,sessionInfo-method | Man page |
makeSource | Man page Source code |
makeUserFun | Source code |
manifest | Man page |
manifest,SessionManifest | Man page |
manifest,SessionManifest-method | Man page |
manifest<- | Man page |
manifest<-,SessionManifest | Man page |
manifest<-,SessionManifest-method | Man page |
manifestFromCheckoutDir | Man page Source code |
manifestFromGHOrg | Source code |
manifest_df | Man page |
manifest_df,PkgManifest | Man page |
manifest_df,PkgManifest-method | Man page |
manifest_df,SessionManifest | Man page |
manifest_df,SessionManifest-method | Man page |
manifest_df<- | Man page |
manifest_df<-,PkgManifest | Man page |
manifest_df<-,PkgManifest-method | Man page |
manifest_df<-,SessionManifest | Man page |
manifest_df<-,SessionManifest-method | Man page |
noVignettesArg | Source code |
normalizePath2 | Man page Source code |
notrack | Man page |
notrack,NULL | Man page |
notrack,NULL-method | Man page |
nrow | Man page |
nrow,PkgManifest | Man page |
nrow,PkgManifest-method | Man page |
nrow,SessionManifest | Man page |
nrow,SessionManifest-method | Man page |
packages | Man page |
packages,SwitchrCtx | Man page |
packages,SwitchrCtx-method | Man page |
parseSessionInfoString | Man page Source code |
parse_git_repo | Source code |
parsedSessionInfo-class | Man page |
paste0 | Source code |
pkgname | Man page |
pkgname,PkgSource | Man page |
pkgname,PkgSource-method | Man page |
pkgname<- | Man page |
pkgname<-,PkgSource | Man page |
pkgname<-,PkgSource-method | Man page |
publishManifest | Man page |
publishManifest,PkgManifest,character | Man page |
publishManifest,PkgManifest,character-method | Man page |
publishManifest,SessionManifest,character | Man page |
publishManifest,SessionManifest,character-method | Man page |
publishManifest,SwitchrCtx,ANY | Man page |
publishManifest,SwitchrCtx,ANY-method | Man page |
publishManifest,missing,ANY | Man page |
publishManifest,missing,ANY-method | Man page |
rVersionManifest | Man page Source code |
remOtherPkgVersions | Source code |
removeLib | Man page Source code |
repoFromString | Source code |
requireNamespace2 | Source code |
sh_init_script | Man page |
sh_init_script,SwitchrParam | Man page |
sh_init_script,SwitchrParam-method | Man page |
sh_init_script<- | Man page |
sh_init_script<-,SwitchrParam,ANY | Man page |
sh_init_script<-,SwitchrParam-method | Man page |
shell_timing | Man page |
shell_timing,SwitchrParam | Man page |
shell_timing,SwitchrParam-method | Man page |
shell_timing<- | Man page |
shell_timing<-,SwitchrParam | Man page |
shell_timing<-,SwitchrParam-method | Man page |
silent_inet | Source code |
sneakyreqpkg | Source code |
sourceFromManifest | Source code |
subdir | Man page |
subdir,PkgSource | Man page |
subdir,PkgSource-method | Man page |
subdir<- | Man page |
subdir<-,PkgSource | Man page |
subdir<-,PkgSource-method | Man page |
switchBack | Man page Source code |
switchDeps | Man page |
switchTo | Man page |
switchTo,SwitchrCtx,ANY | Man page |
switchTo,SwitchrCtx,ANY-method | Man page |
switchTo,character,PkgManifest | Man page |
switchTo,character,PkgManifest-method | Man page |
switchTo,character,RepoSubset | Man page |
switchTo,character,RepoSubset-method | Man page |
switchTo,character,SessionManifest | Man page |
switchTo,character,SessionManifest-method | Man page |
switchTo,character,SwitchrCtx | Man page |
switchTo,character,SwitchrCtx-method | Man page |
switchTo,character,character | Man page |
switchTo,character,character-method | Man page |
switchTo,character,missing | Man page |
switchTo,character,missing-method | Man page |
switchrBaseDir | Man page Source code |
switchrDontUnload | Man page Source code |
switchrManifest | Man page Source code |
switchrNoUnload | Man page Source code |
system_w_init | Man page Source code |
tail | Man page |
tail,PkgManifest | Man page |
tail,PkgManifest-method | Man page |
tail,SessionManifest | Man page |
tail,SessionManifest-method | Man page |
updateGit | Source code |
updateManifest | Man page Source code |
updateSVN | Source code |
update_PACKAGES | Man page Source code |
url.exists | Source code |
vec_get | Source code |
versions_df | Man page |
versions_df,SessionManifest | Man page |
versions_df,SessionManifest-method | Man page |
versions_df<- | Man page |
versions_df<-,SessionManifest | Man page |
versions_df<-,SessionManifest-method | Man page |
warning2 | Man page Source code |
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