API for gobics/meander
Metatranscriptomic Analysis of Differential Expression in R

Global functions
BUTTONS.ON.OFF Source code
CANCEL.FUNCTION Source code
ERROR.methodDefinition_addTo.ErrorStack Source code
ERROR.methodDefinition_handle Source code
ERROR.methodDefinition_initialize Source code
ERROR.methodDefinition_obtain.callStack Source code
ERROR.methodDefinition_obtain.formattedThrowString Source code
ERROR.methodDefinition_throw Source code
FATAL_ERROR.methodDefinition_handle Source code
FILE_WRITE_ERROR.methodDefinition_handle Source code
FILE_WRITE_ERROR.methodDefinition_initialize Source code
MY_WARNING.methodDefinition_initialize Source code
MY_WARNING2.methodDefinition_initialize Source code
MainWindow.methodDefinition_create Source code
MainWindow.methodDefinition_initialize Source code
MeandeR.interface Source code
Message.waiting Source code
NAME.SVG.header Source code
NAME.SVG.includepic Source code
NAME.SVG.link Source code
NAME.SVG.rect Source code
NOTIFICATION.methodDefinition_issue Source code
OK.FUNCTION Source code
StatusMessage.methodDefinition_initialize Source code
WARNING.methodDefinition_initialize Source code
WARNING.methodDefinition_issue Source code
WARNING_DIFFERENT_METHOD.methodDefinition_initialize Source code
WARNING_NO_REPLACEMENT.methodDefinition_initialize Source code
analyse.br.dummy Source code
analyse.methods.dummy Source code
analyse.pathway.dummy Source code
analyse.pca.dummy Source code
analyse.venn.dummy Source code
appendInputdata Source code
arrange.Text Source code
attemptExecution Source code
bad.fun Source code
bindStrings Source code
br.selection Source code
build.Frame Source code
build.Pathways.HTML.Data Source code
build.Table.Rows Source code
button.dummy Source code
button.dummy.analyse.br Source code
button.dummy.analyse.methods Source code
button.dummy.analyse.pathway Source code
button.dummy.analyse.pca Source code
button.dummy.analyse.venn Source code
button.dummy.input.fasta Source code
button.dummy.input.fastanorrna Source code
button.dummy.input.object Source code
button.dummy.input.uproc Source code
button.dummy.output.csv Source code
button.dummy.output.figures Source code
button.dummy.output.svghtml Source code
button.dummy.process.category Source code
button.dummy.process.conditions Source code
button.dummy.process.output Source code
button.dummy.process.score Source code
button.dummy.process.taxonomy Source code
button.factory Source code
buttonbuilder Source code
buttonbuilder.bytemplate Source code
calc.FilteringScore Source code
calculate.vennreplacement Source code
cancel.function Source code
change.states.object Source code
change.uprocscorethreshold Source code
check.ConfigFile Source code
check.DNA Source code
check.RDS Source code
check.dir Source code
check.input Source code
check.package Source code
check.someuproc.error Source code
check.state Source code
check.testforpackage Source code
check.uproc Source code
check.uprocversion Source code
check_RLSQ Source code
checkanduse.object Source code
checkboxlist.builder Source code
compute.Offset Source code
convertTo.HTML_StringArray Source code
create.Bar.Frame Source code
create.Canvas Source code
create.Children Source code
create.ConfigFile Source code
create.Control Source code Source code
create.Footer Source code
create.HTML.Output Source code
create.Header Source code
create.Key Source code
create.Output.Orthologs Source code
create.Output.Pathways Source code
create.PCA.Frame Source code
create.Pie.Frame Source code
create.directory Source code
create.matrix Source code
detect.RNA Source code
detect.RNA.multi Source code
determine.Screen.Dimension Source code
determine.WindowDecoration.Size Source code
do.Drawing Source code
do.bad Source code
do.pca Source code
do.plot.naow Source code
dostuff Source code
draw.Bars Source code
draw.Edges Source code
draw.KeyPairs Source code
draw.Nodes Source code
draw.Overview Source code
draw.PCA Source code
draw.Piece Source code
draw.Point Source code
dummy.loadobject.function Source code
edit.ConfigFile.Keys Source code
emptyfunction Source code
expand.Node Source code
export.csv Source code
exportKey.Dialog Source code
extract.ErrorFeatures Source code
extract.Matrix Source code
extract.SubTree Source code
extract.object.environment Source code
fakefunction Source code
filter.key.dt Source code
filter.multihit.dt Source code
find.unselected.functions Source code
format.Count Source code
format.Perc Source code
general.setting.uproc Source code
general.settings Source code
general.settings.consensus Source code
general.settings.dummy Source code
general.settings.pickvalue Source code
get.Color.Pairs Source code
get.Conditions Source code
get.Name Source code
get.PathwayLinks Source code
get.Rank Source code
get.RdsFileDescriptor Source code
get.yesno Source code
getfiles.for.selection Source code
handle.Error Source code
handle.ErrorObject Source code
has.Flag Source code
has.GUI_Support Source code
help.function Source code
init.Dir Source code
init.GUI Source code
init.Tree Source code Source code
initialize.Button.Object Source code
input.button.fasta.func Source code
input.fasta.dummy Source code
input.fastanorrna.dummy Source code
input.object.dummy Source code
input.uproc.dummy Source code
install.additional.packages Source code
interactive.Taxa Source code
interactive.score Source code
is.ErrorClassObject Source code
is.ErrorObject Source code
is.ErrorSubclassObject Source code
is.ReferenceClassObject Source code
is.ValidError Source code
is.ValidErrorString Source code
isValid.ConfigFile Source code
ko2br.path Source code
ko2br.path.A Source code
ko2br.path.B Source code
ko2br.path.counts Source code
layout.Children Source code
load.ConfigFile Source code
load.ConfigFile.Keys Source code
load.ConfigFile.as.object Source code
load.kegg.object.parts Source code
loadobject.function Source code
main.interface Man page
make.PCA Source code
meandeR.frontend Source code
meander.resume Source code
meander.start Source code
merge.Forest Source code
method.priority Source code
method.priority.one Source code
method.priority.two Source code
obtain.Colors Source code
obtain.Coordinates Source code
obtain.Forest Source code
obtain.IDString Source code
obtain.Names Source code
obtain.Size Source code
obtain.Table Source code
obtain.Tree Source code
obtain.X_Coordinates Source code
obtain.X_Coordinates.SubTree Source code
obtain.Y_Coordinates Source code
ok.fun Source code
ok.function Source code
onLoad Source code
output.svghtml.dummy Source code
override.TclVarBlock Source code
parse.TCLTK.Geometry Source code
perform.SVGcreation Source code
perform.consensusselecion Source code
perform.dataconstruction.rds Source code
perform.deseq Source code
perform.deseq2 Source code
perform.edger Source code
perform.pathwaydetection Source code
perform.plot.statistics Source code
perform.pvalcalc Source code
perform.quickdatatable Source code
perform.rna.statistics Source code
perform.samr Source code
phancy.plot Source code
plot.axis.function Source code
plot.generate.vennreplacement Source code
plot.lines Source code
plot.pca Source code
plot.points Source code
plot.priority Source code
plot.statistics.ggplot2 Source code
plot.statistics.plot Source code
plot.uproc.scores Source code
plot.vennreplacement Source code
prepare.Object Source code
prepare.Output.Dir Source code
prepare.svgvectors.colour Source code
process.kowithmincounts Source code
process.score.dummy Source code
process.storeRDS Source code
process.taxonomy.dummy Source code
process.uproc Source code
purge.Tree Source code
read.ConfigFile.Keys Source code
reset.function Source code
restore.ErrorObject Source code
rlsq_get.Scores Source code
save.csv.dummy Source code
save.figures Source code
save.object.all Source code
save.object.datatable Source code
save.object.dummy Source code
saveFile.Dialog Source code
select.File.list Source code
select.List Source code
select.dir Source code
select.multiple.List Source code
select.multiple.files Source code
set.Conditions Source code
set.Content Source code
set.Flag Source code
set.Labels Source code
set.methods Source code
set.object.environment Source code
set.objectinput.conditions Source code
set.objectinput.object Source code
set.selected.Conditions Source code
set.string Source code
setInputdata Source code
setObjectposition Source code
sleepfunction Source code
spawn.buttons Source code
spawn.retrycancel.messagebox Source code
split.ErrorString Source code
split.object Source code
start.DNA Source code
start.DNAnoRNA Source code
start.GUI Source code
start.Object Source code
start.RDS Source code
start.UProC Source code
start.consensus Source code
storeObjectpart Source code
stupidfunction Source code
swtich.function Source code
tax.Select Source code
taxTag.AddPrefix Source code
taxTag.DelPrefix Source code
tcltk.Message.Box Source code
tcltk.assign.files2category Source code
tcltk.input.box Source code
tcltk.listbox Source code
tcltk.multiple.input.boxes Source code
tcltk.select.category Source code
toggle.Flag Source code
unselect Source code
unset.Flag Source code
update.OnEnter.HandlerFactory Source code
update.OnLeave.HandlerFactory Source code
update.Select.HandlerFactory Source code
uproc.working.check Source code
window.center Source code
window.next.to.parent Source code
write.ColorKey.HTML Source code
write.Ortholog.HTML Source code
write.Pathway.HTML Source code
write.html.files Source code
gobics/meander documentation built on May 14, 2017, 1:58 p.m.