Man pages for gofflab/astRal
Spatial Projection Analysis

aba_array_dimsTitle
ccf_annotationGet CCFv3 Annotation
clustersGeneric to extract clusters from SpatialExperiment object
clusters-SpatialExperiment-methodMethod to extract clusters from CDS object
coordinatesGeneric to access SpatialExperiment coordinates from...
coordinates-SpatialExperiment-methodGeneric to access SpatialExperiment coordinates from...
embeddingsGeneric to access SpatialExperiment embedding slot
embeddings-setGeneric to set SpatialExperiment embedding slot element
embeddings-set-SpatialExperiment-methodMethod to add to SpatialExperiment embedding slot list.
embeddings-SpatialExperiment-methodGeneric to access SpatialExperiment embedding slot
exprsGeneric to access SpatialExperiment count matrix
exprs-SpatialExperiment-methodMethod to access SpatialExperiment count matrix
fDataGeneric to access SpatialExperiment rowData table
fData-setGeneric to set SpatialExperiment rowData table
fData-set-SpatialExperiment-methodMethod to set SpatialExperiment rowData table
fData-SpatialExperiment-methodGeneric to access SpatialExperiment rowData table
get_ontologyGet Ontology from Allen
helloHello, World!
image_reg_visiumImage registration to 10x Visium fiducials
myColorRampmyColoRamp utility
NewSpatialExperimentCreate a new SpatialExperiment object.
pDataGeneric to access SpatialExperiment colData table
pData-setGeneric to set SpatialExperiment colData table
pData-set-SpatialExperiment-methodMethod to set SpatialExperiment colData table
pData-SpatialExperiment-methodMethod to access SpatialExperiment colData table
reduce_dimension_spatialTitle
SpatialExperimentThe SpatialExperiment class
spatial_plot2D spatial plot
spatial_plot_3d3D spatial plot
gofflab/astRal documentation built on Oct. 21, 2020, 5:18 a.m.