aba_array_dims | Title |
ccf_annotation | Get CCFv3 Annotation |
clusters | Generic to extract clusters from SpatialExperiment object |
clusters-SpatialExperiment-method | Method to extract clusters from CDS object |
coordinates | Generic to access SpatialExperiment coordinates from... |
coordinates-SpatialExperiment-method | Generic to access SpatialExperiment coordinates from... |
embeddings | Generic to access SpatialExperiment embedding slot |
embeddings-set | Generic to set SpatialExperiment embedding slot element |
embeddings-set-SpatialExperiment-method | Method to add to SpatialExperiment embedding slot list. |
embeddings-SpatialExperiment-method | Generic to access SpatialExperiment embedding slot |
exprs | Generic to access SpatialExperiment count matrix |
exprs-SpatialExperiment-method | Method to access SpatialExperiment count matrix |
fData | Generic to access SpatialExperiment rowData table |
fData-set | Generic to set SpatialExperiment rowData table |
fData-set-SpatialExperiment-method | Method to set SpatialExperiment rowData table |
fData-SpatialExperiment-method | Generic to access SpatialExperiment rowData table |
get_ontology | Get Ontology from Allen |
hello | Hello, World! |
image_reg_visium | Image registration to 10x Visium fiducials |
myColorRamp | myColoRamp utility |
NewSpatialExperiment | Create a new SpatialExperiment object. |
pData | Generic to access SpatialExperiment colData table |
pData-set | Generic to set SpatialExperiment colData table |
pData-set-SpatialExperiment-method | Method to set SpatialExperiment colData table |
pData-SpatialExperiment-method | Method to access SpatialExperiment colData table |
reduce_dimension_spatial | Title |
SpatialExperiment | The SpatialExperiment class |
spatial_plot | 2D spatial plot |
spatial_plot_3d | 3D spatial plot |
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