NewSpatialExperiment: Create a new SpatialExperiment object.
In gofflab/astRal: Spatial Projection Analysis
Description
Usage
Arguments
Value
Description
Create a new SpatialExperiment object.
Usage
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NewSpatialExperiment(
expression_data,
spatial_coords,
barcode_metadata = NULL,
gene_metadata = NULL
)
Arguments
expression_data
expression data matrix for an experiment, can be a
sparseMatrix.
barcode_metadata
data frame containing attributes of individual pixels/voxels/barcodes,
where row.names(barcode_metadata) = colnames(expression_data).
gene_metadata
data frame containing attributes of features
(e.g. genes), where
row.names(gene_metadata) = row.names(expression_data).
Value
a new SpatialExperiment object
gofflab/astRal documentation built on Oct. 21, 2020, 5:18 a.m.
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Description Usage Arguments Value
Description
Create a new SpatialExperiment object.
Usage
1 2 3 4 5 6 | NewSpatialExperiment(
expression_data,
spatial_coords,
barcode_metadata = NULL,
gene_metadata = NULL
)
|
Arguments
expression_data |
expression data matrix for an experiment, can be a sparseMatrix. |
barcode_metadata |
data frame containing attributes of individual pixels/voxels/barcodes,
where |
gene_metadata |
data frame containing attributes of features
(e.g. genes), where
|
Value
a new SpatialExperiment object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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