dispersionPlot: Mean count vs dispersion plot

In gofflab/cummeRbund-BioC-Bridge: Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.

Description

A scatter plot comparing the mean counts against the estimated dispersion for a given level of features from a cuffdiff run.

Usage

## S4 method for signature 'CuffData'
dispersionPlot(object)
## S4 method for signature 'CuffSet'
dispersionPlot(object)

Arguments

object

An object of class ('CuffData')

Details

None

Value

ggplot object with geom_point layer

Note

None

Author(s)

Loyal A. Goff

References

None

Examples

	a<-readCufflinks(system.file("extdata", package="cummeRbund")) #Create CuffSet object from sample data
	genes<-genes(a) #Create CuffData object for all genes
	d<-dispersionPlot(genes) #Create plot object
	d #render plot object

gofflab/cummeRbund-BioC-Bridge documentation built on May 17, 2019, 7:30 a.m.