pca.dist.matrix: pca.dist.matrix

In gongx030/DrImpute: Imputing Dropout Events in Single-Cell RNA-Sequencing Data

Description

PCA of distance matrix

Usage

pca.dist.matrix(X, k, dist.method = "spearman", mc.cores = 1,
  batch.size = NA)

Arguments

X	Log transformed gene expression matrix (Gene by Cell).
k	Number of PCs
dist.method	Distance method (default: spearman)
mc.cores	Number of CPU cores (default: 1)
batch.size	Batch size of sampling based MDS approximation

Value

A matrix object

Author(s)

Wuming Gong

References

Wuming Gong, Il-Youp Kwak, Pruthvi Pota, Kaoko Koyano-Nakagawa and Daniel J. Garry (2017+) DrImpute: Imputing dropout eveents in single cell RNA sequencing data

gongx030/DrImpute documentation built on Dec. 10, 2020, 6:23 p.m.