README.md

In gongx030/scmetrics: A R package for measuring the performance in single cell data

scmetrics

scmetrics is a package that implements a common work flow for several single cell RNA sequence metrics

Prerequisites

The following R packages are required for installation of scmetrics:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install(c("SingleCellExperiment", "AnnotationDbi"))
devtools::install_github('skinnider/flavin')

The current available methods on the development branch are: * ARI * NMI * ASW * Kbet * Graph Connectivity * AUROC Score * PPI Z-Score * Reactome Z-Score

gongx030/scmetrics documentation built on March 19, 2022, 4:49 a.m.