Files in goodarzilab/APAlog
Analysis of alternative poly A site usage
.Rbuildignore
.gitignore
.readthedocs.yml
APAlog.Rproj
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/Tests.R
README.md
data/APALog _logo3.png
data/pA.toy2.rda
data/pA_design.rda
data/volcano_1.png
data/volcano_2.png
docs/Makefile
docs/_build/doctrees/environment.pickle
docs/_build/doctrees/index.doctree
docs/_build/html/.buildinfo
docs/_build/html/_sources/index.rst.txt
docs/_build/html/_static/alabaster.css
docs/_build/html/_static/basic.css
docs/_build/html/_static/custom.css
docs/_build/html/_static/doctools.js
docs/_build/html/_static/documentation_options.js
docs/_build/html/_static/file.png
docs/_build/html/_static/jquery-3.5.1.js
docs/_build/html/_static/jquery.js
docs/_build/html/_static/language_data.js
docs/_build/html/_static/minus.png
docs/_build/html/_static/plus.png
docs/_build/html/_static/pygments.css
docs/_build/html/_static/searchtools.js
docs/_build/html/_static/underscore-1.12.0.js
docs/_build/html/_static/underscore.js
docs/_build/html/index.html
docs/_build/html/objects.inv
docs/_build/html/quantseq.html
docs/_build/html/rnaseq.html
docs/_build/html/search.html
docs/_build/html/searchindex.js
docs/conf.py
docs/index.rst
docs/make.bat
environment.yml
man/adj_p.Rd
man/glm_deviance_test_p.Rd
man/pA_logit_1tr_pairs.Rd
man/pA_logit_dev.Rd
man/pA_logit_pairwise.Rd
man/pA_multi_logit.Rd
man/remove_0_1_pA_transcripts.Rd
vignettes/APAlog_tutorial.Rmd
vignettes/APAlog_tutorial.ipynb
