gorillayue/RIPSeeker: RIPSeeker: a statistical package for identifying protein-associated transcripts from RIP-seq experiments
Infer and discriminate RIP peaks from RIP-seq alignments using two-state HMM with negative binomial emission probability. While RIPSeeker is specifically tailored for RIP-seq data analysis, it also provides a suite of bioinformatics tools integrated within this self-contained software package comprehensively addressing issues ranging from post-alignments processing to visualization and annotation.
Getting started
Browse package contents
Package details |
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| Author | Yue Li |
| Bioconductor views | RIPSeq Sequencing |
| Maintainer | Yue Li <yueli@cs.toronto.edu> |
| License | GPL-2 |
| Version | 1.11.0 |
| URL | http://www.cs.utoronto.ca/~yueli/software.html |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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