gorillayue/RIPSeeker: RIPSeeker: a statistical package for identifying protein-associated transcripts from RIP-seq experiments

Infer and discriminate RIP peaks from RIP-seq alignments using two-state HMM with negative binomial emission probability. While RIPSeeker is specifically tailored for RIP-seq data analysis, it also provides a suite of bioinformatics tools integrated within this self-contained software package comprehensively addressing issues ranging from post-alignments processing to visualization and annotation.

Getting started

Package details

AuthorYue Li
Bioconductor views RIPSeq Sequencing
MaintainerYue Li <yueli@cs.toronto.edu>
URL http://www.cs.utoronto.ca/~yueli/software.html
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
gorillayue/RIPSeeker documentation built on May 17, 2019, 7:59 a.m.