gorpiper: gorpipe-r

In gorpipe/gorpiper: GORpipe Tool for R

gorpipe-r

Description

R library for executing GOR queries using local GORpipe and loading data into R.

gorpipe-r functions

The main function you'll be using is: * get_gorpipe to set up a gorpipe object for executing GOR queries from R

Examples

## Not run: 
library(gorpiper)

full path to gorpipe, e.g. 
path <- "~/User/gor-scripts/bin/gorpipe"

# Make gorpipe object
gorpipe <- get_gorpipe(path)

# Run a simple query

results <- gorpipe("gor #dbsnp# | top 10000")

results

## End(Not run)

gorpipe/gorpiper documentation built on June 24, 2022, 1:16 a.m.