transition: transition

In gowachin/BeeMarkov:

Description

Compute the transition model for one Markov model on DNA.

Usage

transition(file, l_word = 1, n_seq = 1, log = TRUE, type = "")

Arguments

file	a file (fasta) to read and use as training for model
l_word	length of words for the model. Equal to the "order of the model + 1"
n_seq	number of sequences to train the model with
log	boolean information if the transition matrix of the model is in log or not.
type	a indicator ("+" or "-") for printing pretty stuff during computations

Author(s)

Jaunatre Maxime <[e-mail]>

gowachin/BeeMarkov documentation built on Dec. 1, 2019, 2:57 a.m.