check_codon_table: Confirm formatting for user supplied Codon Frequency Table.
In greg-botwin/reversetranslate: Reverse Translate Amino Acid Sequences to Nucleotides
Description
Usage
Arguments
Format
Value
View source: R/check_codon_table.R
Description
Confirm formatting for user supplied Codon Frequency Table.
Usage
1
check_codon_table(codon_tbl)
Arguments
codon_tbl
A Codon Frequency Table with the following column names,
c("codon", "aa", "prop"). Capitalization of column names should not matter.
The prop column must be of type numeric and all proportions between 0 and 1.
The sum of each codons proportion per amino acid must total roughly to 1
(0.98 to 1.02 allowed).
Format
codon_tbl (A Codon Frequency Table):
- codon
Three DNA nucleotides representing the amino acid.
- aa
One letter abbreviation of the amino acid or * for Stop
- prop
The proportion the specific codon is present in the genome
Value
An updated Codon Frequency Table with all column names lower case for
downstream use.
greg-botwin/reversetranslate documentation built on Aug. 24, 2019, 4:04 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Format Value
View source: R/check_codon_table.R
Description
Confirm formatting for user supplied Codon Frequency Table.
Usage
1 | check_codon_table(codon_tbl)
|
Arguments
codon_tbl |
A Codon Frequency Table with the following column names, c("codon", "aa", "prop"). Capitalization of column names should not matter. The prop column must be of type numeric and all proportions between 0 and 1. The sum of each codons proportion per amino acid must total roughly to 1 (0.98 to 1.02 allowed). |
Format
codon_tbl (A Codon Frequency Table):
- codon
Three DNA nucleotides representing the amino acid.
- aa
One letter abbreviation of the amino acid or * for Stop
- prop
The proportion the specific codon is present in the genome
Value
An updated Codon Frequency Table with all column names lower case for downstream use.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.