Man pages for gstricker/GenoGAM
A GAM based framework for analysis of ChIP-Seq data
| asCoordinates | IRanges to Coordinates |
| callPeaks | Call peaks on a GenoGAM object |
| computeRegionSignificance | Compute significance for given regions |
| computeSignificance | computeSignificance |
| computeSizeFactors | computeSizeFactors |
| Coordinates-class | Coordinates class |
| fitGenoGAM | genogam |
| GenoGAM | GenoGAM: A package providing a framework to analyse ChIP-Seq... |
| GenoGAM-class | GenoGAM class |
| GenoGAMDataSet-class | GenoGAMDataSet |
| GenoGAMDataSetList-class | GenoGAMDataSetList |
| GenoGAMDataSetList-metrics | Computing metrics |
| GenoGAMDataSetList-subsetting | Subset method for GenoGAMDataSetList |
| GenoGAMDataSet-metrics | Computing metrics |
| GenoGAMDataSet-subsetting | Subset methods for GenoGAMDataSet |
| GenoGAMFamily-class | GenoGAMFamily class |
| GenoGAMList-class | GenoGAMList class |
| GenoGAMList-subsetting | Subset method for GenoGAMList |
| GenoGAMSettings-class | GenoGAMSettings |
| makeTestGenoGAM | Make an example /codeGenoGAM |
| makeTestGenoGAMDataSet | Make an example /codeGenoGAMDataSet |
| makeTestGenoGAMDataSetList | Make an example /codeGenoGAMDataSet |
| makeTestGenoGAMList | Make an example /codeGenoGAMList |
| plotGenoGAM | The pot function for a GenoGAM object |
| readData | Read Data function |
| writeToBEDFile | Write peaks to BED6+3/4 format |
