computeSignificance: computeSignificance
In gstricker/GenoGAM: A GAM based framework for analysis of ChIP-Seq data
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
The function computes positionwise p-values
Usage
1
computeSignificance(gg, log.p = FALSE)
Arguments
gg
A GenoGAM object.
log.p
Should values be returned in log scale?
Details
Note, that in case the data is stored in HDF5 format, the pvalue 'group' is added on hard drive.
That is, unlike any other function in R, where the input object is not changed, it actually
is in this case. If one wishes to have HDF5 data without the pvalue 'group', one has to
backup the HDF5 files prior to computation or delete them after with rhdf5::h5delete
Value
An updated GenoGAM object, where the pvalue slot is added.
Author(s)
Georg Stricker georg.stricker@in.tum.de
Examples
1
2
3
4
5
## make test GenoGAM
gg <- makeTestGenoGAM()
## compute pvalues
computeSignificance(gg)
pvalue(gg)
gstricker/GenoGAM documentation built on July 15, 2019, 7:39 p.m.
R Package Documentation
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Description Usage Arguments Details Value Author(s) Examples
Description
The function computes positionwise p-values
Usage
1 | computeSignificance(gg, log.p = FALSE)
|
Arguments
gg |
A GenoGAM object. |
log.p |
Should values be returned in log scale? |
Details
Note, that in case the data is stored in HDF5 format, the pvalue 'group' is added on hard drive.
That is, unlike any other function in R, where the input object is not changed, it actually
is in this case. If one wishes to have HDF5 data without the pvalue 'group', one has to
backup the HDF5 files prior to computation or delete them after with rhdf5::h5delete
Value
An updated GenoGAM object, where the pvalue slot is added.
Author(s)
Georg Stricker georg.stricker@in.tum.de
Examples
1 2 3 4 5 | ## make test GenoGAM
gg <- makeTestGenoGAM()
## compute pvalues
computeSignificance(gg)
pvalue(gg)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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