API for gthar/nucleR2
Nucleosome positioning package for R

Global functions
check.mc Source code
controlCorrection Man page
controlCorrection,Rle-method Man page
controlCorrection,SimpleRleList-method Man page
controlCorrection,list-method Man page
controlCorrection,numeric-method Man page
coverAround Source code
coverAroundDF Source code
coverAroundIR Source code
coverAroundSC1 Source code
coverAround_1cor Source code
coverage.rpm Man page
coverage.rpm,CompressedGRangesList-method Man page
coverage.rpm,GRanges-method Man page
coverage.rpm,IRanges-method Man page
coverage.rpm,RangedData-method Man page
doPlot Source code
export.bed Man page Source code
export.bed,CompressedIRangesList-method Man page
export.bed,GRanges-method Man page
export.bed,IRanges-method Man page
export.bed,RangedData-method Man page
export.wig Man page Source code
fftRegion Source code
filterFFT Man page Source code
filterFFT,Rle-method Man page
filterFFT,SimpleRleList-method Man page
filterFFT,list-method Man page
filterFFT,numeric-method Man page
fragmentLenDetect Man page
fragmentLenDetect,AlignedRead-method Man page
fragmentLenDetect,GRanges-method Man page
fragmentLenDetect,RangedData-method Man page
getMergeGroup Source code
getPc Source code
getScoreTxt Source code
getThreshold Source code
getYBottom Source code
lapplyIRange Source code
loadFiles Source code
loadPairedBam Source code
loadPairedBowtie Source code
loadSingleBam Source code
loadSingleBowtie Source code
makeDataDf Source code
makePeakDf Source code
mergeCalls Man page
mergeCalls,GRanges-method Man page
mergeChrom Source code
mid Source code
nitPeaksDf Source code
nucleR Man page
nucleR-package Man page
nucleosomePatterns Source code
nucleosomePatternsDF Source code
nucleosome_htseq Man page
nucleosome_tiling Man page
optimFFT Source code
pad2power2 Source code
pcKeepCompDetect Man page Source code
peakDetection Man page
peakDetection,list-method Man page
peakDetection,numeric-method Man page
peakScoring Man page
peakScoring,IRanges-method Man page
peakScoring,IRangesList-method Man page
peakScoring,list-method Man page
peakScoring,numeric-method Man page
plotCov Source code
plotCoverIndiv Source code
plotCoverOverlap Source code
plotFFT Source code
plotPatterns Source code
plotPeakRects Source code
plotPeaks Man page
plotPeaks,GRanges-method Man page
plotPeaks,IRanges-method Man page
plotPeaks,RangedData-method Man page
plotPeaks,data.frame-method Man page
plotPeaks,numeric-method Man page
plotScoreOrDots Source code
plotScores Source code
plotThresh Source code
processReads Man page
processReads,AlignedRead-method Man page
processReads,CompressedGRangesList-method Man page
processReads,GRanges-method Man page
processReads,RangedData-method Man page
processStrand Source code
processTilingArray Man page Source code
readBAM Man page
readBowtie Man page Source code
readBowtieChr Source code
readBowtieFile Source code
sampleData Source code
synthPlot Source code
synthPlotNoRatio Source code
synthPlotRatio Source code
syntheticNucMap Man page Source code
unlist_as_integer Source code
vectorizedAll Source code
xlapply Source code
gthar/nucleR2 documentation built on March 24, 2018, 9:16 a.m.