tomato: Phylogeny of 36 nightshade accessions.

Description Usage Format Source

Description

An object containing the tree of 36 accessions from 12 species of the genus Solanum (sect Lycopersicon). This tree is a reduced version of the "Best likelihood coalescent-based phylogeny from 100 replicates of MP-EST using 100 kb genome window trees." reported by Pease et al 2016 (PLoS Biology)

Usage

1

Format

A list of class phylo, with 5 variables:

edge

branch identifier, an int vector 36x2

Nnode

Number of nodes, integer

tip.label

Species codes, as in original paper

edge.length

Branch length, in coal units

root.edge

Source

http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1002379


guerreror/pepo documentation built on May 23, 2019, 9:01 p.m.