tomato: Phylogeny of 36 nightshade accessions.
In guerreror/pepo: Estimate Hemiplasy and Homoplasy on a Phylogeny
Description
Usage
Format
Source
Description
An object containing the tree of 36 accessions from 12
species of the genus Solanum (sect Lycopersicon).
This tree is a reduced version of the "Best likelihood
coalescent-based phylogeny from 100 replicates of
MP-EST using 100 kb genome window trees." reported by
Pease et al 2016 (PLoS Biology)
Usage
1
Format
A list of class phylo, with 5 variables:
- edge
branch identifier, an int vector 36x2
- Nnode
Number of nodes, integer
- tip.label
Species codes, as in original paper
- edge.length
Branch length, in coal units
- root.edge
Source
http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1002379
guerreror/pepo documentation built on May 23, 2019, 9:01 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Format Source
Description
An object containing the tree of 36 accessions from 12 species of the genus Solanum (sect Lycopersicon). This tree is a reduced version of the "Best likelihood coalescent-based phylogeny from 100 replicates of MP-EST using 100 kb genome window trees." reported by Pease et al 2016 (PLoS Biology)
Usage
1 |
Format
A list of class phylo, with 5 variables:
- edge
branch identifier, an int vector 36x2
- Nnode
Number of nodes, integer
- tip.label
Species codes, as in original paper
- edge.length
Branch length, in coal units
- root.edge
Source
http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1002379
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.