correctRC: Plate correction using a row-column standardization

In guiblanchet/plateCorrect: Corrections techniques to standardize plates

Plate correction using a row-column standardization

Description

Performs correction on a plate using a row-column standardization. Specifically, row means are calculated after having removed extreme values and each row is divided by this mean. Following, columns are standardized the same way.

Usage

correctRC(mat, lower = 0.25, upper = 0.75)

Arguments

mat	Matrix presenting the data gathered from a plate. See details.
lower	Numeric value presenting the lower fractional range of the data within each row (or column). This values needs to be range between 0 and 1. Default is 0.25. See details.
upper	Numeric value presenting the upper fractional range of the data within each row (or column). This values needs to be range between 0 and 1. Default is 0.75. See details.

Details

The argument mat is a matrix that has the same organisation as the plate to be corrected.

The argument lower needs to be always lower than the argument upper otherwise an error message will be sent.

Value

A matrix with the same dimensions as mat but with the data corrected for edge effect problems.

Author(s)

F. Guillaume Blanchet

guiblanchet/plateCorrect documentation built on May 14, 2022, 12:10 a.m.