Man pages for guidmt/SVM2CRM
SVM2CRM: support vector machine for cis-regulatory elements detections
| cisREfindbed | Create and preprocessing of the input for SVM2CRM analysis |
| createBed | Create bed file of predictions using svm. |
| createSVMinput | Take the output of findFeatureOverlap and then create a... |
| featSelectionWithKmeans | This function select the most meaningful variables in a... |
| findFeatureOverlap | Find the overlap of genomic regions between the output of... |
| frequencyHM | frequencyHM |
| getSignal | Model the signals of each histone marks around genomic... |
| performanceSVM | Estimate the performance of prediction. |
| plotFscore | Plot the F-score in relation with the sensitivity and... |
| plotROC | Plot the ROC curve of the best model |
| predictionGW | Perform prediction of cis-regulatory elements genome-wide |
| smoothInputFS | Smooth the signals of the histone marks to prepare the input... |
| tuningParametersCombROC | Test different models using different kernel of SVM, values... |
