Man pages for guigolab/sQTLseekeR2
R package for splicing QTL mapping
| check.genotype | Check genotype |
| compFscore | F score computation |
| compPvalue | P-values computation. |
| compute.empirical.pv | Compute empirical P-value |
| compute.nominal.pv | Compute nominal P-value |
| hellingerDist | Hellinger distance computation |
| index.genotype | Index the genotype file |
| LD.filter | Linkage disequilibrium (LD) filter |
| md.trans | MaxDiff splicing ratios computation |
| nbDiffPt | Number of non-identical splicing ratio points |
| permutest.betadisper | Betadisper permutation hack |
| prepare.trans.exp | Transcript expression preparation |
| read.bedix | Retrieve a subset of an indexed BED file |
| relativize | Relative expression computation |
| sqtls | sQTL retrieval |
| sqtl.seeker | sQTL seeker |
| sQTLseekeR2-package | sQTLseekeR2: R package for splicing QTL mapping |
| sqtl.seeker.p | Permuted sQTL seeker |
| sqtls.p | sQTL retrieval from permuted phenotypes |
| te.dispersion | Splicing dispersion computation |
