guoguodigit/Metwork
A collection of tools for imaging MS data processing

Package index
Search the guoguodigit/Metwork package
Vignettes
Functions
308
Source code
51
Man pages
11
Home
/
GitHub
/
guoguodigit/Metwork: A collection of tools for imaging MS data processing
/
API

API for guoguodigit/Metwork
A collection of tools for imaging MS data processing

Global functions
Advanced_building Source code
BuildElement Source code
BuildElement_1 Source code
Build_adduct_list Source code
Cardinal Source code
Cardinal_cluster_classification Source code
Cardinal_old Source code
Cardinal_utilities Source code
Center_of_gravity_and_contour Source code
Cleavage_rules_fun Man page
Cleave_noname Source code
ConvertPeptide Source code
ConvertPeptide.2 Source code
Cpd_spectrum_match_rescore Source code
Ctypeof Source code
Do_PMF_search Source code
FDR_cutoff_plot Source code
FDR_cutoff_plot_cpd Source code
FDR_cutoff_plot_protein Source code
Feature_summary_all_files Source code
Generate_HMDBIDS Source code
Generate_proscore_image Source code
Generatespectrum_workflow_maldiquant Source code
HiTMaP_GUI Man page Source code
ID_summary_analysis Source code
IMS_analysis_fun Source code
IMS_analysis_fun_2 Source code
IMS_data_process Source code
Imzml_temp_fix Source code
Kernel_convolution Source code Source code
Load_Cardinal_imaging Source code
Load_IMS_combine Source code
Load_IMS_decov_combine Source code
META_pathway_Whole_Picture Source code
META_pathway_Whole_Picture_discovery_mode Source code
META_pathway_ion_image Source code
META_pathway_ion_image_cardinal Source code
META_pathway_search Source code
MassSpecWavelet_fun Source code
Mass_defect_plot Source code
Meta_feature_list_fun Man page Source code
PCA_ncomp_selection Source code
PMFresultindex Source code
PMFsum Source code
PMFsum_para Source code
PRM_target_slt Source code
Parallel.OS Source code
Parse_rotation Source code
Pathway_overview_graphite Source code
Peptide_Feature_Summary Source code
Peptide_Feature_Summary_array Source code
Peptide_Feature_Summary_data_table Source code
Peptide_Feature_Summary_data_table_fast Source code
Peptide_Feature_Summary_data_table_para Source code
Peptide_Feature_Summary_fast Source code
Peptide_Feature_UNIQUE Source code
Peptide_Summary_para Source code
Peptide_feature_summary_all_files Source code
Peptide_feature_summary_all_files_new Source code
Peptide_modification Man page Source code
Peptide_regions_Summary_fun Source code
PlotPMFsig Source code
Plot_Ion_image_Png Source code
Plot_Ion_image_Png2 Source code
Plot_Ion_image_Png3 Source code
Plot_PMF_all Source code
Plot_cpd_spectrum_match Source code
Plot_cpd_spectrum_match_sig Source code
Preprocessing_segmentation Source code
Protein_feature_list_fun Man page Source code
Protein_feature_list_table_import Source code Source code
Protein_feature_list_table_import_fastaref Source code
Protein_feature_summary_all_files_new Source code
RUN_imagine_workflow Source code
SCORE_CPD Source code
SCORE_PMF Source code
Spectrum_scoring Source code
THERO_IONS_peptides Source code
Whole_Picture_Cluster_mode Source code
WorkingDir Source code Source code
`$.hitmap_project` Source code
`%||%` Source code Source code
`[.hitmap_project` Source code
affine_grid Source code
annotate_PSEA Source code
annotate_cpd Source code
apply_config Source code
apply_template Source code
as.data.frame.hitmap_project Source code
atomes.to.formula Source code
autoStopCluster Source code
benchmark_step Source code
branch_pipeline Source code
build_config Source code
c.hitmap_project Source code
calculate_protein_pixel_scores Source code
checkpoint Source code
cleave_para Source code
cluster_image_cardinal Source code
cluster_image_grid Man page Source code
config_basic Source code
config_permissive Source code
config_strict Source code
convert_peptide_adduct Source code
convert_peptide_adduct_list Source code
convert_peptide_fixmod Source code
convert_peptide_modsymbol Source code Source code
create_template Source code
data_test_rename Source code
debug_step Source code
export_pixel_level_data Source code
export_protein_pixel_data Source code
export_results Source code
fastafile_utils Source code
fetch_ID_from_DB Source code
filter_data Source code
generate_candidates Source code
getMonomass Source code
getMonomass_para Source code
get_atoms Man page Source code
get_atoms_mod Source code
get_coord_info Source code
get_formula_from_atom Source code
get_option Source code
get_pro_acc Source code
get_protein_from_interest_desc Source code
grid.ftable Man page
hitmap_advanced Source code
hitmap_advanced_workflow Source code
hitmap_batch_process Source code
hitmap_candidates_only Source code
hitmap_compare_results Source code
hitmap_create_modification_config Source code
hitmap_create_modification_params Source code
hitmap_create_preprocess_config Source code
hitmap_create_preprocess_params Source code
hitmap_create_project Source code
hitmap_create_search_config Source code
hitmap_export_results Source code
hitmap_flexible_workflow Source code
hitmap_generate_candidates Source code Source code
hitmap_generate_summaries Source code
hitmap_init Source code
hitmap_init_project Source code
hitmap_load_project Source code
hitmap_modular_workflow Source code
hitmap_pmf_only Source code
hitmap_pmf_search Source code
hitmap_pmf_search_region Source code
hitmap_preprocess_file Source code
hitmap_preprocess_only Source code
hitmap_preprocess_segment Source code
hitmap_process_all_regions Source code
hitmap_project Source code
hitmap_project_status Source code
hitmap_quick_start Source code Source code
hitmap_resume_workflow Source code
hitmap_segment_file Source code
hitmap_segment_only Source code
hitmap_step_by_step Source code
hitmap_summarize_results Source code
if_then Source code
imaging_Spatial_Quant Man page Source code
imaging_default_parameter Source code
imaging_identification Man page Source code
imaging_identification_target Source code
init Source code
initialization Source code
intensity.colors_customize Source code
intensity.colors_customize_mono Source code
intensity_sum_para Source code
is_valid_project Source code
isopattern_ppm_filter Source code
isopattern_ppm_filter_peaklist Source code Source code
isopattern_ppm_filter_peaklist_dep Source code
isopattern_ppm_filter_peaklist_par Source code
length.hitmap_project Source code
load_pixel_label Source code
load_project Source code
meets_condition Source code
memory_profile Source code
merge_atoms Man page Source code
merge_branches Source code
metwork_cardinal Source code
metwork_maldiquant Source code
mummichog.lib.mod Source code
mutate_config Source code
names.hitmap_project Source code
nice_file_create Source code
parentIonMasslist Source code
peptide_map_to_protein Source code
percent Source code Source code
pick.peaks Source code
plotRanges Source code
plot_cpd_matching_score Source code
plot_matching_score Source code
plot_matching_score_cpd Source code
preprocess Source code
preprocess_validation Source code
print.hitmap_controller Source code
print.hitmap_project Source code Source code
progress_bar Source code
protein_scoring Source code
quiet Source code Source code
radius_segmentation Source code
radius_segmentation_dist Source code
rank_mz_feature Source code
recheck_peptide_score Source code
remove_cpd_score_outlier Source code
remove_pep_score_outlier Source code
repeat_until Source code
resolve_multi_modes Source code
rotateMSI Source code
rotate_image Source code
run_example_advanced_comprehensive Source code
run_example_basic_pipeline Source code
run_example_batch_processing Source code
run_example_candidates_only Source code
run_example_comparative_pipeline Source code
run_example_conditional_pipeline Source code
run_example_configured_pipeline Source code
run_example_custom_quick_start Source code
run_example_debug_pipeline Source code
run_example_discovery_mode Source code
run_example_dynamic_region_pipeline Source code
run_example_error_handling_pipeline Source code
run_example_filtering_pipeline Source code
run_example_flexible_steps Source code
run_example_high_precision Source code
run_example_iterative_pipeline Source code
run_example_manual_control Source code
run_example_metabolomics_config Source code
run_example_modification_configs Source code
run_example_monitored_pipeline Source code
run_example_multiple_files_individual Source code
run_example_multiple_files_pipeline Source code
run_example_multiple_files_sequential Source code
run_example_parameter_optimization Source code
run_example_pipeline_branching Source code
run_example_pipeline_templates Source code
run_example_pipeline_with_checkpoints Source code
run_example_pmf_only Source code
run_example_preprocess_configs Source code
run_example_preprocessing_only Source code
run_example_progressive_pipeline Source code
run_example_quality_control Source code
run_example_quick_start_basic Source code
run_example_quick_start_custom Source code
run_example_result_export Source code
run_example_resume_workflow Source code
run_example_reusable_components Source code
run_example_segmentation_only Source code
run_example_simple_quick_start Source code
run_example_step_by_step_basic Source code
run_example_step_by_step_interactive Source code
run_example_targeted_analysis Source code
run_example_with_qc Source code
run_spatial_quant_workflow Source code
run_step_candidates Source code
run_step_init Source code
run_step_pmf Source code
run_step_preprocess Source code
run_step_summarize Source code
searchPMF Source code
searchPMF_data_frame Source code
searchPMF_para Source code
search_pmf Source code
segment Source code
select_data Source code
seq.cov Source code
seq.ppm Source code
set_options Source code
setworkdir Source code
simple_ion_image Source code
sort_run_msi Source code
string_slice Source code
summarize Source code
summary.hitmap_project Source code
testcolume Source code
try_step Source code
validate_preprocess_params Source code
validate_state Source code
vendiagram Source code
view_status Source code
virtual_segmentation Source code
visualize_protein_pca Source code
windows_filename Source code
windows_filename2 Source code
guoguodigit/Metwork documentation built on June 11, 2025, 5 a.m.

R Package Documentation

rdrr.io home R language documentation Run R code online

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
ian@mutexlabs.com
Personal blog

 
Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close