cells: cells function for cell type identification

In guokai8/rcellmarker: Identify cell type based on cell markers

cells function for cell type identification

Description

cells function for cell type identification

Usage

cells(
  x,
  species = "human",
  keytype = "SYMBOL",
  tissue = NULL,
  padj = 0.05,
  pvalue = NULL,
  minSize = 3,
  maxSize = 500,
  padj.method = "BH",
  sep = ","
)

Arguments

x	vector contains gene names
species	species name
keytype	keytype for input genes
tissue	tissue type (default NULL)
padj	cutoff p adjust value
pvalue	cutoff pvalue
minSize	minimal number of genes included in significant cell type
maxSize	maximum number of genes included in significant cell type
padj.method	pvalue adjust method(default:"BH")
sep	character string used to separate the genes when concatenating

Author(s)

Kai Guo

guokai8/rcellmarker documentation built on July 10, 2024, 3:56 p.m.