apt_cytoscan_process_batch: Run apt.cytoscan.process() with multithreading

In gustaveroussy/apt.cytoscan.2.4.0: Affymetrix CytoScan processing using apt-copynumber-cyto-ssa (2.4.0)

Run apt.cytoscan.process() with multithreading

Description

Same as apt.cytoscan.process() but in batch mode, with multithreading.

Usage

  apt.cytoscan.process.batch(CEL.list.file = NULL, nthread = 1,
  cluster.type = "PSOCK", ...)

Arguments

CEL.list.file	A CEL filetab-separated file giving the file names of the CEL files and corresponding sample name (see Details section).
nthread	Number of threads for multithreading (see Details).
cluster.type	Type of multithreading cluster (see ?parallel::makeCluster()).
...	Any parameter for the function apt.cytoscan.process(), except CEL and samplename.

Details

CEL.list.file is a tab-separated text file containing 2 columns :

• cel_files : Name (and path) of the CEL file(s)

• SampleName : The output sample name

Author(s)

Bastien Job

gustaveroussy/apt.cytoscan.2.4.0 documentation built on July 10, 2024, 3:46 p.m.